PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100004070011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 301aa    MW: 34471.4 Da    PI: 7.876
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100004070011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.7e-154688145
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                  rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
  Ote100004070011|100004070011 46 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 88
                                  899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-7630IPR009057Homeodomain-like
PROSITE profilePS500905.239936IPR017877Myb-like domain
SuperFamilySSF466895.13E-2029100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-73152IPR009057Homeodomain-like
PROSITE profilePS5129424.9214195IPR017930Myb domain
SMARTSM007173.4E-134593IPR001005SANT/Myb domain
PfamPF002491.2E-134688IPR001005SANT/Myb domain
CDDcd001675.63E-94888No hitNo description
Gene3DG3DSA:1.10.10.601.1E-205391IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT NCRLRWINYL RPDLKRGTFS QEEENLIIEL  60
HAVLGNRWSQ IAAQLPGRTD NEIKNLWNSS IKKKLRQRGI DPTTHKPLSE IEKNEKLSNN  120
KEKTSEGCSE LRFVDISTDK SKLQNTAASS THEFFLNRLV ASHETSSSCK SSDFSGFLSF  180
NTGLSXXXXX XXXXXXXXKP TEIISDHFST NPNSLVKFQN WERPSNVGVD CNFFDNNAFT  240
EDVKWSEYLH APFLLGSSVN GQDVYGEPAK LPAEGGWRPP QQQAAELYNK HFQGLPFEQF  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2212955108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087570.11e-104transcription factor MYB86
SwissprotQ8VZQ22e-68MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A059PRD81e-110A0A059PRD8_SALMI; MYB-related transcription factor
STRINGXP_009628184.11e-100(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]