PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100003460071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 299aa MW: 33637.1 Da PI: 9.5097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.8 | 6.2e-51 | 15 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvkaeeke 57 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp k+ +e+e Ote100003460071|100003460071 15 LPPGFRFHPTDEELVVHYLKKKAAAAPLPV-TIIAEVDLYKFDPWELPGnlisiclvspsefkliilrrlspaKAIFGEQE 94 79****************************.89***************5599********99999998887664444999* PP NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 wyfFs+rd+ky++g r+nra++sgyWkatg+dk+v++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Ote100003460071|100003460071 95 WYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVMTGgGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 166 *************************************867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-54 | 7 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.661 | 15 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-28 | 16 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MESTDSSTGS QQPQLPPGFR FHPTDEELVV HYLKKKAAAA PLPVTIIAEV DLYKFDPWEL 60 PGNLISICLV SPSEFKLIIL RRLSPAKAIF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW 120 KATGTDKPVM TGGGTQKVGV KKALVFYGGK PPKGIKTNWI MHEYRLVDNK PSSKPPGCDF 180 INKKGSLRHK FLENDQNLYE GMMSDAMNSA KMQQLHLLPA KRSIPNLYWN DEPNADSPST 240 KRFLGETNCD GRGDETTNSI ATILSQMPQT PXXXXXXXXX XXXXXXXXQY QVSGVNWYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-62 | 1 | 168 | 6 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-62 | 1 | 168 | 6 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-62 | 1 | 168 | 6 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-62 | 1 | 168 | 6 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swm_B | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swm_C | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swm_D | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swp_A | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swp_B | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swp_C | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
3swp_D | 7e-62 | 1 | 168 | 9 | 147 | NAC domain-containing protein 19 |
4dul_A | 6e-62 | 1 | 168 | 6 | 144 | NAC domain-containing protein 19 |
4dul_B | 6e-62 | 1 | 168 | 6 | 144 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098344.1 | 1e-134 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 3e-87 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A2G9HYQ0 | 1e-125 | A0A2G9HYQ0_9LAMI; Uncharacterized protein | ||||
STRING | VIT_19s0014g03300.t01 | 1e-119 | (Vitis vinifera) | ||||
STRING | Migut.M00864.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Publications ? help Back to Top | |||
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