PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100003460061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 24947.7 Da PI: 9.617 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.5e-32 | 12 | 85 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Ote100003460061|100003460061 12 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 85 689**********************************9999.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 42.3 | 1 | 108 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.09E-42 | 8 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-15 | 15 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSDSSPCKAL FGEKEWYFFS PRDRKYPNGS RPNRVAGSGY WKATGTDKII TTEGRKVGIK 60 KALVFYIGKA PKGTKTNWIM HEYRLSESPR KSGSSKLDDW VLCRIYKKNT SSHDRSAVAG 120 IRSNEYNHDS SSSSSSQYDD VLDSLPELDD PGLNPVWPEI QAQHGPVQPT NAIRNDGYAP 180 AADLMDSKSV NERVANSGIL QSGLTRGFSA SVDPFSGNQG FRFRQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swm_B | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swm_C | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swm_D | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swp_A | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swp_B | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swp_C | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
3swp_D | 8e-66 | 6 | 113 | 66 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098342.1 | 6e-84 | NAC domain-containing protein 72 | ||||
Swissprot | Q93VY3 | 1e-74 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | A0A4D8YKK0 | 6e-82 | A0A4D8YKK0_SALSN; Uncharacterized protein | ||||
STRING | Migut.H01915.1.p | 5e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3122 | 24 | 52 |
Publications ? help Back to Top | |||
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