PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100003020021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28446.9 Da PI: 7.9706 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.6 | 1.3e-09 | 113 | 160 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ote100003020021|100003020021 113 SHSLAERVRREKISERMKLLQDLVPGC----DKVTGKALMLDEIINYVQSLQ 160 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-16 | 107 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.01E-10 | 107 | 164 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.9E-17 | 109 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.682 | 109 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-7 | 113 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-11 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDRDYFPPSQ SWSSDRSFLN PNSFPNANNG GAITDLPNLA AKLSCRSFNG QLARLPLNSN 60 EESSACESGE TMKRKAISIK DERSNSPKEV EKTQKPPRDY IHVRARRGQA TDSHSLAERV 120 RREKISERMK LLQDLVPGCD KVTGKALMLD EIINYVQSLQ RQVEMFQQKT TPFHQMYPLD 180 SSAPAFYHNH NVQQQQLYAT NIISGPLGQC SVDSLPFDGF NQNIPQQLPD DLDSIVRMEF 240 VQNSVQNKTR T |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089038.1 | 7e-58 | transcription factor bHLH62 isoform X2 | ||||
Swissprot | Q9SRT2 | 4e-44 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A4D8ZHM1 | 8e-70 | A0A4D8ZHM1_SALSN; Uncharacterized protein | ||||
STRING | POPTR_0002s24990.1 | 7e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1057 | 23 | 83 |
Publications ? help Back to Top | |||
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