PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100002990061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 202aa MW: 22372.8 Da PI: 7.3616

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100002990061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.6	6.6e-36	23	114	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 Fl+k++++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+ Ote100002990061\|100002990061 23 FLTKTFQLVDDPTIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFA 94 9***************************************************************99......... PP ESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkks 102 ++ F++g+k ll++i+r+k Ote100002990061\|100002990061 95 NDCFRRGEKPLLREIQRRKI 114 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.3E-57	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.6E-38	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.98E-36	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	8.4E-21	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.1E-32	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.4E-21	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.4E-21	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSGDSAGGGS GGGESQRSVP TPFLTKTFQL VDDPTIDDLI SWNEDGTTFI VWRPAEFARD 60 LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRR GEKPLLREIQ RRKISAGNNX 120 XXXXXXXXXS VVNTQAIPTA VPAAVAIQIS PSNSGDEQVL SSNSSPAAAT PPXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXT IG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-27	23	112	29	129	Heat shock factor protein 1
5d5v_B	1e-27	23	112	29	129	Heat shock factor protein 1
5d5v_D	1e-27	23	112	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022845524.1	2e-81	heat stress transcription factor B-2b-like
Refseq	XP_022845525.1	2e-81	heat stress transcription factor B-2b-like
Swissprot	Q6Z9C8	6e-66	HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBL	A0A1S3XXH5	3e-77	A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBL	A0A1U7V7G9	3e-77	A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRING	Migut.A00803.1.p	5e-79	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2182	24	60

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xiang J, et al. Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice. Plant Cell Rep., 2013. 32(11): p. 1795-806 [PMID:23949687]