PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100002730131

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 260aa MW: 28755.3 Da PI: 4.3919

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100002730131	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	57	99	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N+++ Lr ++P+ +K++Ka+i + A+eYI sL Ote100002730131\|100002730131 57 LSERNRRKKLNERLYALRAVVPNI-----TKMDKASIIKDAIEYIESL 99 57*******************7.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.501	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.63E-14	53	104	No hit	No description
SuperFamily	SSF47459	4.45E-17	54	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-14	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-16	56	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.1E-10	57	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDNTIDDDYK TCWPSNVFLQ PDELDSYFEE MSVGGYYDSS SPDGGLDQSS AASKNILSER 60 NRRKKLNERL YALRAVVPNI TKMDKASIIK DAIEYIESLH SEQRAIQAEI SEMESGGAPL 120 SYSDHQADST GFSAAKPIKR SRTMENYYDY SCVSTSAPSP TSFAMQSSPI ELLELRVSSM 180 AEKMIVVSLT CSKGTDTMVK LCDIFESLDL KIITANITAF SGRLLKTVFL EGDEDEKEVL 240 SFKIRAAIAA LNDPDSPISI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094110.1	1e-112	transcription factor bHLH35
Swissprot	Q2HIV9	2e-73	BH035_ARATH; Transcription factor bHLH35
TrEMBL	A0A4D9ANF2	1e-130	A0A4D9ANF2_SALSN; Uncharacterized protein
STRING	XP_009760780.1	1e-104	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2923	24	51