PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100002350021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HB-other

Protein Properties

Length: 520aa MW: 58160.8 Da PI: 7.8278

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100002350021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR ++ q+e+Le+++++++yps++++ +LA+++gLte+qV+ WF+ rR k+kk Ote100002350021\|100002350021 21 KKRIVKSRAQVEALEKFYNEHKYPSESMKLQLAESIGLTEKQVSGWFCHRRLKDKK 76 899***************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-21	4	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	17	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-17	19	81	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-19	19	81	IPR001356	Homeobox domain
CDD	cd00086	8.55E-17	21	76	No hit	No description
Pfam	PF00046	3.4E-16	21	76	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MGEESCEMHP EDDKALSEKN KKRIVKSRAQ VEALEKFYNE HKYPSESMKL QLAESIGLTE 60 KQVSGWFCHR RLKDKKLMNG ENHASVRQDR SSGVIQDRGS GHRQDSCGST KQGDDKNLDT 120 REVESGRLTS KEFSAADLVY EHGSHYAGNY DRTNDASSGS SSSLRNIPPN HQNGDPSDAV 180 TSRYQIPKFP TDLKGVKTRP GPSGYLKLKG RLENPAIAAV KRQLGKHYLE DGPPLGVDFD 240 PLPPGAFESS MQDPVQDNYH SGEDVRGSPD FSNVHQNPKF RKGREYLSSM APFNSDNDGT 300 NFKTRSGFDI PDSYIHQKSR IKTSFSNSGS YYPRSNSSAE FTEGSARDIS GFGGRDEYGF 360 GRKPAVELTA MDTVQSYSNL QAYGGKLREK HAESWSRKFN DVSTRVALGE KNEYGNSNLT 420 AKRNEYHSSG DKGLSVEVIK DGKIYNNRRM INEHQVNFPH KNDTIGKKRV REEFQHQQLP 480 RATLMVDNLP HNYQVVRSAT EMPSSFSEDE ESGGTSSSVD

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MGEESCEMHP EDDKALSEKN KKRIVKSRAQ VEALEKFYNE HKYPSESMKL QLAESIGLTE  60
KQVSGWFCHR RLKDKKLMNG ENHASVRQDR SSGVIQDRGS GHRQDSCGST KQGDDKNLDT  120
REVESGRLTS KEFSAADLVY EHGSHYAGNY DRTNDASSGS SSSLRNIPPN HQNGDPSDAV  180
TSRYQIPKFP TDLKGVKTRP GPSGYLKLKG RLENPAIAAV KRQLGKHYLE DGPPLGVDFD  240
PLPPGAFESS MQDPVQDNYH SGEDVRGSPD FSNVHQNPKF RKGREYLSSM APFNSDNDGT  300
NFKTRSGFDI PDSYIHQKSR IKTSFSNSGS YYPRSNSSAE FTEGSARDIS GFGGRDEYGF  360
GRKPAVELTA MDTVQSYSNL QAYGGKLREK HAESWSRKFN DVSTRVALGE KNEYGNSNLT  420
AKRNEYHSSG DKGLSVEVIK DGKIYNNRRM INEHQVNFPH KNDTIGKKRV REEFQHQQLP  480
RATLMVDNLP HNYQVVRSAT EMPSSFSEDE ESGGTSSSVD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011080403.1	0.0	uncharacterized protein LOC105163662 isoform X3
Refseq	XP_012838435.1	0.0	PREDICTED: homeotic protein proboscipedia
TrEMBL	A0A4D9AV99	0.0	A0A4D9AV99_SALSN; Uncharacterized protein
STRING	Migut.N02368.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3436	22	42