PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100001960071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 283aa    MW: 31904.6 Da    PI: 6.8657
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100001960071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-192978255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                   y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Ote100001960071|100001960071 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFSTAEEAAMAYDEAARRLYG 78
                                  69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-322888No hitNo description
SuperFamilySSF541712.68E-212987IPR016177DNA-binding domain
SMARTSM003808.5E-372992IPR001471AP2/ERF domain
PROSITE profilePS5103222.6952986IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-302987IPR001471AP2/ERF domain
PfamPF008473.9E-132978IPR001471AP2/ERF domain
PRINTSPR003671.5E-103041IPR001471AP2/ERF domain
PRINTSPR003671.5E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MENCRKSPLK PWKKGPARGK GGPQNAMCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFS  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLRS NFNPLCKSQK FKCFPSNTFL SKLPTTGLLN  120
LNAQPSVHVI HQRLQQLKKS GVLGQDSSSC SSSTDPKNDV HFLNGQPQLK STPDANEFSS  180
RSKVSTSEDK PQIDLNEFLQ QLGVLKREEQ QPCESDASKN FTEVEIESLS FQDDEDTSAA  240
NTFNWDTLSE IAEADIHLGA DTTTYYAHDS SAELIFHPSI WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-183091667ATERF1
3gcc_A2e-183091667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075213.11e-151dehydration-responsive element-binding protein 2F
SwissprotQ9SVX56e-84DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A4D9B3Q71e-147A0A4D9B3Q7_SALSN; Uncharacterized protein
STRINGMigut.J01780.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]