PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100001870071

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 373aa MW: 41867.5 Da PI: 5.2596

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100001870071	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.7e-09	139	164	22	48
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 g+W+ +a++m+ gR +kqc++r+++ l Ote100001870071\|100001870071 139 GNWSEVAKYMP-GRIGKQCRERYHNNL 164 47*******.**********975 PP
2	Myb_DNA-binding	45.3	2e-14	200	240	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+ eE+ ++++++++lG++ W+ Iar gR+++ +k++w+ Ote100001870071\|100001870071 200 WSDEEEMKIIEGHAKLGNR-WSEIARLYVPGRSENAVKNHWH 240 *****************.**9999*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	9.466	88	164	IPR017877	Myb-like domain
SMART	SM00717	0.024	92	166	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-12	136	175	IPR009057	Homeodomain-like
CDD	cd00167	2.51E-6	139	164	No hit	No description
Pfam	PF00249	3.3E-7	139	164	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.28E-16	139	165	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.81	192	247	IPR017930	Myb domain
SMART	SM00717	4.9E-12	196	245	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.28E-16	198	239	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-12	200	240	IPR001005	SANT/Myb domain
CDD	cd00167	5.41E-11	200	240	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-15	200	246	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEGEELNTLY SILENGSNFW VQPSTPLTSV DSLFTPPNDI VSACPNSDIV PIPPPSLISQ 60 DQTMENQALN PNAGVEQANS GKGKKKVKET WYKGPWTRYE DRXXXXXXXX XXXSNFVCYI 120 XXXXXXXXXX XXXXXTFDGN WSEVAKYMPG RIGKQCRERY HNNLRPNIKI NKFNNNIYIK 180 VAKNLCLSSF LNSDQKSPGW SDEEEMKIIE GHAKLGNRWS EIARLYVPGR SENAVKNHWH 240 AITRKQFSKK RISRPANKSH IYQSNILENY IRAKMFNAAP XXXXXXXXXX XISQTVIAEN 300 VPLSIDDYDW DEVPLSTFEI ADIIQSLYSD DAGNGDLPPA AADGHNGAST SFAAAETAGG 360 EEMEFGVGDN GGN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEGEELNTLY SILENGSNFW VQPSTPLTSV DSLFTPPNDI VSACPNSDIV PIPPPSLISQ  60
DQTMENQALN PNAGVEQANS GKGKKKVKET WYKGPWTRYE DRXXXXXXXX XXXSNFVCYI  120
XXXXXXXXXX XXXXXTFDGN WSEVAKYMPG RIGKQCRERY HNNLRPNIKI NKFNNNIYIK  180
VAKNLCLSSF LNSDQKSPGW SDEEEMKIIE GHAKLGNRWS EIARLYVPGR SENAVKNHWH  240
AITRKQFSKK RISRPANKSH IYQSNILENY IRAKMFNAAP XXXXXXXXXX XISQTVIAEN  300
VPLSIDDYDW DEVPLSTFEI ADIIQSLYSD DAGNGDLPPA AADGHNGAST SFAAAETAGG  360
EEMEFGVGDN GGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-21	141	247	50	128	MYB TRANSFORMING PROTEIN
1mse_C	2e-21	141	246	27	104	C-Myb DNA-Binding Domain
1msf_C	2e-21	141	246	27	104	C-Myb DNA-Binding Domain