PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100001860042
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 172aa    MW: 19811 Da    PI: 4.7195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100001860042genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.62.5e-3611181128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   +ppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+  e ++wyfFs+r +        +r+t+sg
  Ote100001860042|100001860042   1 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMCEGSKWYFFSRRTQ--------SRITESG 72 
                                   79*************************999.99**************976677899******9854........799**** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yW++ g +++++s +g+ vg+kk  +f+ g+ ++g kt+W+m+eyrl
  Ote100001860042|100001860042  73 YWQQVGIEEPIYS-GGQRVGIKKYSAFFLGQISQGAKTNWIMQEYRL 118
                                   *************.99*****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100540.951139IPR003441NAC domain
SuperFamilySSF1019411.44E-421124IPR003441NAC domain
PfamPF023653.1E-222118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLDLYP YDPWDLDGKA MCEGSKWYFF  60
SRRTQSRITE SGYWQQVGIE EPIYSGGQRV GIKKYSAFFL GQISQGAKTN WIMQEYRLSD  120
SNSSTRSSSR RRSSRVVRNC DSDDDDGTQL SCLDEVFLSL DDLDEISLPN YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-38112617153NO APICAL MERISTEM PROTEIN
1ut4_B7e-38112617153NO APICAL MERISTEM PROTEIN
1ut7_A7e-38112617153NO APICAL MERISTEM PROTEIN
1ut7_B7e-38112617153NO APICAL MERISTEM PROTEIN
3swm_A6e-38112620156NAC domain-containing protein 19
3swm_B6e-38112620156NAC domain-containing protein 19
3swm_C6e-38112620156NAC domain-containing protein 19
3swm_D6e-38112620156NAC domain-containing protein 19
3swp_A6e-38112620156NAC domain-containing protein 19
3swp_B6e-38112620156NAC domain-containing protein 19
3swp_C6e-38112620156NAC domain-containing protein 19
3swp_D6e-38112620156NAC domain-containing protein 19
4dul_A7e-38112617153NAC domain-containing protein 19
4dul_B7e-38112617153NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092697.13e-88NAC domain-containing protein 104 isoform X1
RefseqXP_020553092.13e-88NAC domain-containing protein 104 isoform X1
RefseqXP_020553093.13e-88NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK62e-72NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2G9FYG12e-88A0A2G9FYG1_9LAMI; Uncharacterized protein
STRINGXP_009762857.11e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]