PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100001860041
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 184aa    MW: 21353.8 Da    PI: 4.7585
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100001860041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.33.1e-3611181128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   +ppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++PwdL+ k+  e ++wyfFs+r +        +r+t+sg
  Ote100001860041|100001860041   1 MPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMCEGSKWYFFSRRTQ--------SRITESG 72 
                                   79*************************999.99**************976677899******9854........799**** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yW++ g +++++s +g+ vg+kk  +f+ g+ ++g kt+W+m+eyrl
  Ote100001860041|100001860041  73 YWQQVGIEEPIYS-GGQRVGIKKYSAFFLGQISQGAKTNWIMQEYRL 118
                                   *************.99*****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-451149IPR003441NAC domain
PROSITE profilePS5100544.3351150IPR003441NAC domain
PfamPF023653.8E-222118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLDLYP YDPWDLDGKA MCEGSKWYFF  60
SRRTQSRITE SGYWQQVGIE EPIYSGGQRV GIKKYSAFFL GQISQGAKTN WIMQEYRLSD  120
SNSSTRSSSR RRSSRVVDYS KWVICRVYER NCDSDDDDGT QLSCLDEVFL SLDDLDEISL  180
PNYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-42115417169NO APICAL MERISTEM PROTEIN
1ut4_B8e-42115417169NO APICAL MERISTEM PROTEIN
1ut7_A8e-42115417169NO APICAL MERISTEM PROTEIN
1ut7_B8e-42115417169NO APICAL MERISTEM PROTEIN
3swm_A8e-42115420172NAC domain-containing protein 19
3swm_B8e-42115420172NAC domain-containing protein 19
3swm_C8e-42115420172NAC domain-containing protein 19
3swm_D8e-42115420172NAC domain-containing protein 19
3swp_A8e-42115420172NAC domain-containing protein 19
3swp_B8e-42115420172NAC domain-containing protein 19
3swp_C8e-42115420172NAC domain-containing protein 19
3swp_D8e-42115420172NAC domain-containing protein 19
4dul_A8e-42115417169NAC domain-containing protein 19
4dul_B8e-42115417169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106335.12e-98NAC domain-containing protein 104-like
RefseqXP_027159802.12e-98NAC domain-containing protein 104
SwissprotQ8GWK61e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2G9FYG11e-100A0A2G9FYG1_9LAMI; Uncharacterized protein
STRINGXP_009762857.17e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]