PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100001190031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 306aa MW: 33475.9 Da PI: 4.9814 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.2 | 1.2e-16 | 15 | 54 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks+ClkkYCeCf+a+ Cse+CkC dCkN e Ote100001190031|100001190031 15 KHNKGCHCKKSECLKKYCECFQANILCSENCKCMDCKNYE 54 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 19.987 | 1 | 55 | IPR005172 | CRC domain |
SMART | SM01114 | 2.2E-19 | 15 | 56 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.7E-13 | 18 | 53 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MHMQEEAGEV LVSGKHNKGC HCKKSECLKK YCECFQANIL CSENCKCMDC KNYEGSEERQ 60 ALFHGEHANN IIYIQQAANA AITGAIGSSG YGSPPLNKKR KGQDLVYGST MKDPLHLLEQ 120 FQQVNQIKAL VSSPLLPSIP DAGPSNASVI NPSKFTYRSL LADIIQPQDL KELCSVLVVY 180 SGEAARILAA ERVQSKDPLC ESEVERTNLE ESGSDGADVS KGRPMSLSTL AVMCDEEDTA 240 FTSIPSSNGL PECNDQSQLN IEQGLTEGYS EQERIILTQF RECLNKLITV GEIKGKPHSQ 300 TLLCII |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-13 | 15 | 64 | 83 | 132 | Protein lin-54 homolog |
5fd3_B | 2e-13 | 15 | 64 | 83 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078441.1 | 1e-147 | protein tesmin/TSO1-like CXC 5 | ||||
Swissprot | Q9SZD1 | 1e-98 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A4D9BNC3 | 1e-163 | A0A4D9BNC3_SALSN; Uncharacterized protein | ||||
STRING | Migut.K00502.1.p | 1e-127 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |