PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.C_Chr_18.0001000131 | ||||||||
Common Name | OT_ostta18g01760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | HB-other | ||||||||
Protein Properties | Length: 233aa MW: 26779.6 Da PI: 12.1903 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30 | 8.6e-10 | 44 | 89 | 12 | 57 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 le+L ++e +r p+a++r++LA+++g e+ V WF rRa k+ fgenesh1_pg.C_Chr_18.0001000131 44 LEVLRGVYELERRPDAATRRRLARQIGAREEAVNAWFRSRRAEGKR 89 899***************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0045 | 28 | 94 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.855 | 30 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-9 | 42 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.01E-4 | 44 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 44 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-7 | 44 | 89 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDSIARADDG PTRRRRDAPS TDATEDYMTR ARRLQSAGVD ERGLEVLRGV YELERRPDAA 60 TRRRLARQIG AREEAVNAWF RSRRAEGKRR RARRALCVVA LLVLAAGGVF LAIHVARQTA 120 FARRRMQTLG RRYKWLTRSG LPRPYASGRN RAVARKPLTY ERERVINAAG KEEVRQVIYT 180 KDNPKASPIT RTTEETPRQK LERLRYDAAK RSNKGRIKGR SRNRNRVRQS NT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003084219.2 | 1e-156 | Homeobox domain | ||||
TrEMBL | A0A096PA34 | 1e-155 | A0A096PA34_OSTTA; Homeobox domain | ||||
STRING | A0A096PA34 | 1e-156 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9294 | 5 | 5 |
Publications ? help Back to Top | |||
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