PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | fgenesh1_pg.C_Chr_14.0001000151 | ||||||||
Common Name | OT_ostta14g01990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28249.9 Da PI: 4.7626 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 101 | 150 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++++ rE++RRd +Ns+feeL+ +l + ++K +Ka+++ A+ +Ik L fgenesh1_pg.C_Chr_14.0001000151 101 KKTKSTREKKRRDALNSRFEELQAVLEPG---AATKADKATVVAAATVFIKRL 150 7899************************6...6******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.19E-9 | 97 | 153 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-11 | 99 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.097 | 99 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-10 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-12 | 101 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-8 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MATTPVDDAI DAALMGSSDW LNEFFSTFDG DVASALLDDV EAFEQPLVGD HEAEVGQVPR 60 GESESGLESK KRKAVDEVEN EVENASVGNG VRTSTLSEGA KKTKSTREKK RRDALNSRFE 120 ELQAVLEPGA ATKADKATVV AAATVFIKRL RAEHARLAEG IMRLQEDNIQ KAKLTKALAI 180 EREALRKEKQ ILLHEKLRIE AQLQGFLANM PFASPADGVR SLASTKGAEV QMPSWTLATT 240 FMIPTTTEGE EDVTLRAPVA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022841354.1 | 0.0 | Myc-type, basic helix-loop-helix (bHLH) domain | ||||
TrEMBL | A0A096PAY9 | 0.0 | A0A096PAY9_OSTTA; Myc-type, basic helix-loop-helix (BHLH) domain | ||||
STRING | A0A096PAY9 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5460 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-11 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|