PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.C_Chr_09.0001000301 | ||||||||
Common Name | OT_ostta09g04220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | CPP | ||||||||
Protein Properties | Length: 489aa MW: 52762.1 Da PI: 8.7148 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.1 | 1.1e-15 | 160 | 198 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 e+k+CnCkkskClk+YCeCfaag++C++ C+C++C+N+ e fgenesh1_pg.C_Chr_09.0001000301 160 ESKKCNCKKSKCLKLYCECFAAGAFCND-CSCQQCQNTVE 198 689*************************.********987 PP | |||||||
2 | TCR | 54.4 | 2.5e-17 | 230 | 270 | 1 | 41 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++kgC+Ckks ClkkYCeCf+ag+kC+e CkCe+C+Nke+ fgenesh1_pg.C_Chr_09.0001000301 230 RHTKGCHCKKSACLKKYCECFQAGVKCQEYCKCEGCMNKED 270 589***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.8E-14 | 159 | 199 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 31.603 | 160 | 270 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.2E-12 | 162 | 196 | IPR005172 | CRC domain |
SMART | SM01114 | 8.9E-16 | 230 | 271 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.8E-12 | 233 | 269 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MSDIERLALS AEASIKRGSD VSGGRRASDV RRQSLEDDRY VLQNMYDEFD DSVLGVDERG 60 SQPRTAGTRE DLNGKRSSTT GASTEWTAGF TKTLKNFDVD SPRVGTRSAR RTVVPPSRTA 120 FEEYTPAVKN AQANAKQGGS ATKISAQHSK NSSACREPVE SKKCNCKKSK CLKLYCECFA 180 AGAFCNDCSC QQCQNTVENV SVVEKTRSQI EARNPNAFLS KIEDDGDDAR HTKGCHCKKS 240 ACLKKYCECF QAGVKCQEYC KCEGCMNKED APPSSGPRGG SAKNGKASTQ KTKAGRLAKT 300 PIEVASELAA RSIQDDLVIE DFKVFDKFGS PPRSFSHADD LSSEYSALNK SVEQSPLRTL 360 LLSEGVQLSP FFSTSSLPQS ALSPLRGAGY MSPLRPQLSP LRPSGFMSPI TPGLRAGPGK 420 YSIRSIGKAA VPLFNEDSGN SAGSREFKSP QDARTIGLGG WAHEVSKDGS FRATFTSPIP 480 LKTPDVRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-21 | 162 | 272 | 12 | 125 | Protein lin-54 homolog |
5fd3_B | 3e-21 | 162 | 272 | 12 | 125 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022839713.1 | 0.0 | CRC domain | ||||
TrEMBL | A0A090MAS8 | 0.0 | A0A090MAS8_OSTTA; CRC domain | ||||
STRING | A0A090MAS8 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP323 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-24 | TESMIN/TSO1-like CXC 2 |
Publications ? help Back to Top | |||
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