PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_09.0001000301
Common NameOT_ostta09g04220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CPP
Protein Properties Length: 489aa    MW: 52762.1 Da    PI: 8.7148
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_09.0001000301genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.11.1e-15160198241
                              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                      e+k+CnCkkskClk+YCeCfaag++C++ C+C++C+N+ e
  fgenesh1_pg.C_Chr_09.0001000301 160 ESKKCNCKKSKCLKLYCECFAAGAFCND-CSCQQCQNTVE 198
                                      689*************************.********987 PP

2TCR54.42.5e-17230270141
                              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                      +++kgC+Ckks ClkkYCeCf+ag+kC+e CkCe+C+Nke+
  fgenesh1_pg.C_Chr_09.0001000301 230 RHTKGCHCKKSACLKKYCECFQAGVKCQEYCKCEGCMNKED 270
                                      589***********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-14159199IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.603160270IPR005172CRC domain
PfamPF036384.2E-12162196IPR005172CRC domain
SMARTSM011148.9E-16230271IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-12233269IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MSDIERLALS AEASIKRGSD VSGGRRASDV RRQSLEDDRY VLQNMYDEFD DSVLGVDERG  60
SQPRTAGTRE DLNGKRSSTT GASTEWTAGF TKTLKNFDVD SPRVGTRSAR RTVVPPSRTA  120
FEEYTPAVKN AQANAKQGGS ATKISAQHSK NSSACREPVE SKKCNCKKSK CLKLYCECFA  180
AGAFCNDCSC QQCQNTVENV SVVEKTRSQI EARNPNAFLS KIEDDGDDAR HTKGCHCKKS  240
ACLKKYCECF QAGVKCQEYC KCEGCMNKED APPSSGPRGG SAKNGKASTQ KTKAGRLAKT  300
PIEVASELAA RSIQDDLVIE DFKVFDKFGS PPRSFSHADD LSSEYSALNK SVEQSPLRTL  360
LLSEGVQLSP FFSTSSLPQS ALSPLRGAGY MSPLRPQLSP LRPSGFMSPI TPGLRAGPGK  420
YSIRSIGKAA VPLFNEDSGN SAGSREFKSP QDARTIGLGG WAHEVSKDGS FRATFTSPIP  480
LKTPDVRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2116227212125Protein lin-54 homolog
5fd3_B3e-2116227212125Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839713.10.0CRC domain
TrEMBLA0A090MAS80.0A0A090MAS8_OSTTA; CRC domain
STRINGA0A090MAS80.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-24TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]