PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

fgenesh1_pg.C_Chr_09.0001000270

Common Name

OT_ostta09g03790

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 149aa MW: 17087.7 Da PI: 11.5744

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.C_Chr_09.0001000270	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.5	7.9e-07	99	131	22	54
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++ p+ +e+++LAkk+gL+ + V+++F N R + fgenesh1_pg.C_Chr_09.0001000270 99 DPFPTLAEKKRLAKKVGLKVAAVSNFFINARVR 131 5789***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.697	72	135	IPR001356	Homeobox domain
SMART	SM00389	5.9E-4	74	139	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-11	76	139	IPR009057	Homeodomain-like
CDD	cd00086	3.72E-5	76	135	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.4E-16	83	136	IPR009057	Homeodomain-like
Pfam	PF05920	3.2E-13	92	131	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MGVDGSLSDS VDAREVRFER AFDDVEARFD GLKRRLEWPR SLGREGIALN ARAGVREMFA 60 RARLHRDKTR QVRRAKNRKL SGNDAQRALR MWILDHFDDP FPTLAEKKRL AKKVGLKVAA 120 VSNFFINARV RFWKPLVLQL AAEIERGD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003081371.2	1e-101	Homeobox KN domain
TrEMBL	A0A090MAP9	1e-99	A0A090MAP9_OSTTA; Homeobox KN domain
STRING	A0A090MAP9	1e-100	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3210	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27220.2	3e-15	BEL1-like homeodomain 5

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]