PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_07.0001000239
Common NameOT_ostta07g03620
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family GATA
Protein Properties Length: 1323aa    MW: 151076 Da    PI: 5.3143
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_07.0001000239genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA24.44.2e-08298333134
                             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                                      C+nCg +k  +  +R gpd  ++LC aCGl+y  +g
  fgenesh1_pg.C_Chr_07.0001000239 298 CANCGISKeqSNGMRFGPDSRRSLCTACGLFYVTMG 333
                                      *******************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.7E-5297331IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF637482.89E-5751792No hitNo description
SuperFamilySSF473702.09E-21856974IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.3E-22859968IPR001487Bromodomain
SMARTSM002973.2E-19860971IPR001487Bromodomain
CDDcd043694.40E-23863964No hitNo description
PfamPF004398.4E-10878955IPR001487Bromodomain
PROSITE profilePS5001415.921880952IPR001487Bromodomain
PRINTSPR005031.0E-5897913IPR001487Bromodomain
PRINTSPR005031.0E-5933952IPR001487Bromodomain
SuperFamilySSF473706.02E-2611471281IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.2E-2611661274IPR001487Bromodomain
SMARTSM002971.8E-2511671277IPR001487Bromodomain
CDDcd043694.70E-2411701272No hitNo description
PfamPF004392.9E-1411851261IPR001487Bromodomain
PROSITE profilePS5001415.50711881258IPR001487Bromodomain
PROSITE patternPS00633011931250IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1323 aa     Download sequence    Send to blast
MGGNEELTEY ERERLAKIER NKALMERLAL AKLASEAGLG GEAEGGRGRG RGRGRGRGRG  60
RGPRVKREPA RQSSRVEKLK KESRLMSWRG TRIERRLRTH WMIEVDADVQ CLGTADEENR  120
LLTGALLPRN YFVEGYVGEE PYIAWTDDQG KHHMVWGDDD LRENKRHVRT DEEGCETASA  180
AALIIPKELS RRQRVAYEEF MNVRAARALD MLIGSAAPSW NRPYHPTYID EQSARLWAPL  240
IPRQQGYITS ELTKSVDEDD MERKKREFRR EFASKDTKVR ESDTDKYEML QGEVCDSCAN  300
CGISKEQSNG MRFGPDSRRS LCTACGLFYV TMGHIYRPKG FCDEMNTPVE FVDLSDGIKE  360
ETVEKKRERF QVSLSHVSED GHAHFKFDIV EDEDEVEIKE AEDEIQALAR SEEDWIRTSG  420
KPTFHSNFSA HAYEVPGMVR RETVEDYPID TVDWSSLTHF TKLVLLASTG VITNKQVMDD  480
EIPDEKRTQR AVPFAAHSHL KRMVETGRYE KYEMNITESE RYKPMELGWK PEHIDGVTMF  540
GYMEEQIQES LEAHMERRAE AAAMEEGEEK REMLGNIAAE QIDAIRAFEH QVDKGLEAFQ  600
KSADKAVRDV ERERERARRQ KEAEEEEARL QAEAELYGPR RSANACDMAE AVGYEESEIQ  660
ELDGEEEIPE PIAMICNGHV GHLLAMGKTR SERVHDKDTD RVVGAGEFER MSGCGSSKKW  720
KSSCRVMLPD GNPGSNMLTY MVERADEKGD SVIGQRIAVW WPLEEVFYLG HVEAYNAANG  780
EHTVRYDDNQ VEELMLFMQR IKWLENDALL PDENEEEDVN KTRIHVRPPG VAGAEEATVR  840
IPLGGFSVYT RVQPSTTTMK HSERRKCYEI LNIVRKVEVD GRDLCGPFER LPTRFALPEY  900
YDIIKCPVDC ASIERMLRKP AGGYPNVWFF LVAMELMFTN CKRFNDPASL LYRDSEVLRK  960
AYLDAVEERF PGHPVPPSIT VYDSVDEPAW DKPVDDAVIE DEDDPFPPKY VAPTLKTVTM  1020
NKRRANADYR NDSDSEEYVR PRKSQRSAPR DRRFPKEPLQ CASYILARVR GNAMPLNKLH  1080
KIMVEKGVTE FATARRPLAA LGALLRQHPL VFRDARGGEV WELVEKTHVD SDEEIILNDE  1140
NDHPQEMSDS AELPPPATHE LPKLAMTRKE TDYCRTVLNA IRACKDKKGR SRAEAFEILP  1200
TRKQLPQYYR AISNPIDLGS IQKCLNAGGY PTTWMFCVAL ELMLSNCQNF NESSSVLYKD  1260
AVVLRDVIAK KIQEEYPGHP LPERDSVYDA AKCVEPDWRP TTAPGNGKKP PTLKFTMRTV  1320
AK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15060RGRGRGRGRGR
25261RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839484.10.0Zinc finger, NHR/GATA-type
TrEMBLA0A090M3P60.0A0A090M3P6_OSTTA; Zinc finger, NHR/GATA-type
STRINGA0A090M3P60.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP636355
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]