PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_pg.C_Chr_07.0001000008 | ||||||||
Common Name | Ot07g00090, OT_ostta07g00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | Nin-like | ||||||||
Protein Properties | Length: 897aa MW: 98728.8 Da PI: 5.9034 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 75.7 | 5.3e-24 | 504 | 552 | 3 | 51 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + i+le+l+++F++++k+AA++Lgv+ T+LKriCRqyGI+RWP+R ++s fgenesh1_pg.C_Chr_07.0001000008 504 WGITLEVLQANFHKHLKQAASDLGVGSTTLKRICRQYGIRRWPRRSLNS 552 579*******************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.391 | 485 | 573 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-19 | 506 | 552 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.58E-14 | 711 | 792 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.6E-13 | 713 | 787 | No hit | No description |
SMART | SM00666 | 1.9E-5 | 714 | 799 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 14.096 | 714 | 787 | IPR000270 | PB1 domain |
CDD | cd05992 | 4.30E-11 | 715 | 795 | No hit | No description |
Pfam | PF00564 | 1.0E-7 | 718 | 791 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 4.49E-9 | 812 | 883 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.6E-7 | 820 | 881 | No hit | No description |
SMART | SM00666 | 14 | 821 | 896 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 897 aa Download sequence Send to blast |
MASCQREPGD ALLEAFLEGL PNADASDDPV LGDVESLFDG LVDDMNSDQA QRVQGGALAT 60 TQGPRDGRVG RPATAGERGR NTRSTSRSKS RSRARSAGRD STVRSLVRAA LASTGSVNDG 120 LEDAVDNVRS KLTAMAEGVK SIIEHECLIQ VWLVDKRDEE WTMSACDELV GLKSANHMDA 180 LWAFHSEFKS FSLNAYMAGH DGFTPVSGAP GRVFVTKEPE FTPSVQCYNP SEYQRKALAC 240 EMGCHSQLLV PIFLEAVETP IGIVEVTFLR VLDNIGTLYR QILNEITSVG LKSATSPLLG 300 PPIMMAERIA PDSQRLDSGS IATRLQDFCS RMDIPYAQIW IPCAADKTFV TAGAPFYQIS 360 THFNQYRNFA SNVGIADSHG TFSKVWTSGS MIWLHDLSTI SRRDLVLKHA CELLQIRAMC 420 VSKVAFNDVK TGAPLEVLLE VLLDPNLKSP REQAKTVQAF WSSLESSLNV SVVTQTEKTW 480 LEEMKKEQTA SDVQIEGTNV STMWGITLEV LQANFHKHLK QAASDLGVGS TTLKRICRQY 540 GIRRWPRRSL NSRNGRMNEI LTKSQGGEDS YGELRSESPV QPTGSAISYA SELLDQAAER 600 FARDAAGVSH EAQHHKRGLE ERVHRGGNLG ALWRGGKMQR GASWHGNDAA LNAIEFDVPT 660 RFEQSVHGMY NFNMSPPPLD QSVHGNTALD ELRNNQEMAD FFEGLVQDPS EHQALIVKIS 720 VGDTLMRVRL VTASRYAELT EALGAMLSET LANCKLKYQD DEGDWCLMRS QEDFDECIAL 780 NTHKGKSNVI RIKLTMDGTV KDLFKLEQVV RKLPPSVVAN AISVKASVED DVVRFKLTSD 840 MTFAALLAKL HLNGKKEVTL HYLDDGDEWI RLGGDLDLLE ARICGDAAGA LRIKCM* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003080115.1 | 0.0 | RWP-RK domain | ||||
TrEMBL | A0A1Y5IKZ6 | 0.0 | A0A1Y5IKZ6_OSTTA; Eukaryotic translation initiation factor eIF2A-domain-containing protein | ||||
STRING | Q015Z7 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5474 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 2e-17 | Nin-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 9836868 |
Publications ? help Back to Top | |||
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