PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_07.0001000008
Common NameOt07g00090, OT_ostta07g00080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 897aa    MW: 98728.8 Da    PI: 5.9034
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_07.0001000008genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK75.75.3e-24504552351
                           RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                                      + i+le+l+++F++++k+AA++Lgv+ T+LKriCRqyGI+RWP+R ++s
  fgenesh1_pg.C_Chr_07.0001000008 504 WGITLEVLQANFHKHLKQAASDLGVGSTTLKRICRQYGIRRWPRRSLNS 552
                                      579*******************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.391485573IPR003035RWP-RK domain
PfamPF020421.4E-19506552IPR003035RWP-RK domain
SuperFamilySSF542774.58E-14711792No hitNo description
Gene3DG3DSA:3.10.20.2402.6E-13713787No hitNo description
SMARTSM006661.9E-5714799IPR000270PB1 domain
PROSITE profilePS5174514.096714787IPR000270PB1 domain
CDDcd059924.30E-11715795No hitNo description
PfamPF005641.0E-7718791IPR000270PB1 domain
SuperFamilySSF542774.49E-9812883No hitNo description
Gene3DG3DSA:3.10.20.2401.6E-7820881No hitNo description
SMARTSM0066614821896IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MASCQREPGD ALLEAFLEGL PNADASDDPV LGDVESLFDG LVDDMNSDQA QRVQGGALAT  60
TQGPRDGRVG RPATAGERGR NTRSTSRSKS RSRARSAGRD STVRSLVRAA LASTGSVNDG  120
LEDAVDNVRS KLTAMAEGVK SIIEHECLIQ VWLVDKRDEE WTMSACDELV GLKSANHMDA  180
LWAFHSEFKS FSLNAYMAGH DGFTPVSGAP GRVFVTKEPE FTPSVQCYNP SEYQRKALAC  240
EMGCHSQLLV PIFLEAVETP IGIVEVTFLR VLDNIGTLYR QILNEITSVG LKSATSPLLG  300
PPIMMAERIA PDSQRLDSGS IATRLQDFCS RMDIPYAQIW IPCAADKTFV TAGAPFYQIS  360
THFNQYRNFA SNVGIADSHG TFSKVWTSGS MIWLHDLSTI SRRDLVLKHA CELLQIRAMC  420
VSKVAFNDVK TGAPLEVLLE VLLDPNLKSP REQAKTVQAF WSSLESSLNV SVVTQTEKTW  480
LEEMKKEQTA SDVQIEGTNV STMWGITLEV LQANFHKHLK QAASDLGVGS TTLKRICRQY  540
GIRRWPRRSL NSRNGRMNEI LTKSQGGEDS YGELRSESPV QPTGSAISYA SELLDQAAER  600
FARDAAGVSH EAQHHKRGLE ERVHRGGNLG ALWRGGKMQR GASWHGNDAA LNAIEFDVPT  660
RFEQSVHGMY NFNMSPPPLD QSVHGNTALD ELRNNQEMAD FFEGLVQDPS EHQALIVKIS  720
VGDTLMRVRL VTASRYAELT EALGAMLSET LANCKLKYQD DEGDWCLMRS QEDFDECIAL  780
NTHKGKSNVI RIKLTMDGTV KDLFKLEQVV RKLPPSVVAN AISVKASVED DVVRFKLTSD  840
MTFAALLAKL HLNGKKEVTL HYLDDGDEWI RLGGDLDLLE ARICGDAAGA LRIKCM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003080115.10.0RWP-RK domain
TrEMBLA0A1Y5IKZ60.0A0A1Y5IKZ6_OSTTA; Eukaryotic translation initiation factor eIF2A-domain-containing protein
STRINGQ015Z70.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP547469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.12e-17Nin-like family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]