PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_05.0001000169
Common NameOT_ostta05g02380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family Nin-like
Protein Properties Length: 275aa    MW: 29979.1 Da    PI: 11.0643
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_05.0001000169genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.23.9e-242067552
                           RWP-RK  5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
                                     ++ ed++  F++pi++AAk Lgvc+TvLK +CR++GI+RWP+Rk+++l
  fgenesh1_pg.C_Chr_05.0001000169 20 VTEEDVRGVFHMPITEAAKRLGVCVTVLKVRCRELGIARWPFRKMRKL 67
                                     577999****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.86388IPR003035RWP-RK domain
PfamPF020421.3E-202067IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDARGGEATR RRGRGGHVVV TEEDVRGVFH MPITEAAKRL GVCVTVLKVR CRELGIARWP  60
FRKMRKLDNM ISILETQKSR TVAAASEDEK ASKLETIKKT RELVLAQPNS NAHAKLGKIN  120
SKLRRKVLES SSARENSAEV SGKSGEYGSV GSGSQRSART NDERLTNKKR SRGEMEQTSA  180
PTRDDHGSLD QLLSAASVVV QNDVHRESSA SPAESTFTLA APIIRDSTVQ PFLGDLLKRT  240
PVRRELPSNV SRPTPRRFDM NANLLLAAVG GTAL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839004.10.0RWP-RK domain
TrEMBLA0A090M5N10.0A0A090M5N1_OSTTA; RWP-RK domain
STRINGA0A090M5N10.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP841650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.11e-14RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]