PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | fgenesh1_pg.C_Chr_05.0001000169 | ||||||||
Common Name | OT_ostta05g02380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 275aa MW: 29979.1 Da PI: 11.0643 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.2 | 3.9e-24 | 20 | 67 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ ed++ F++pi++AAk Lgvc+TvLK +CR++GI+RWP+Rk+++l fgenesh1_pg.C_Chr_05.0001000169 20 VTEEDVRGVFHMPITEAAKRLGVCVTVLKVRCRELGIARWPFRKMRKL 67 577999****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.86 | 3 | 88 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-20 | 20 | 67 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MDARGGEATR RRGRGGHVVV TEEDVRGVFH MPITEAAKRL GVCVTVLKVR CRELGIARWP 60 FRKMRKLDNM ISILETQKSR TVAAASEDEK ASKLETIKKT RELVLAQPNS NAHAKLGKIN 120 SKLRRKVLES SSARENSAEV SGKSGEYGSV GSGSQRSART NDERLTNKKR SRGEMEQTSA 180 PTRDDHGSLD QLLSAASVVV QNDVHRESSA SPAESTFTLA APIIRDSTVQ PFLGDLLKRT 240 PVRRELPSNV SRPTPRRFDM NANLLLAAVG GTAL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022839004.1 | 0.0 | RWP-RK domain | ||||
TrEMBL | A0A090M5N1 | 0.0 | A0A090M5N1_OSTTA; RWP-RK domain | ||||
STRING | A0A090M5N1 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP84 | 16 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-14 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
---|---|---|---|
|