PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.C_Chr_04.0001000291
Common NameOt04g04460, OT_ostta04g04290
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family TALE
Protein Properties Length: 300aa    MW: 34501.9 Da    PI: 6.3597
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.C_Chr_04.0001000291genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox215.9e-072272592254
                                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                       +yps+++++ L + ++L+ +qV +WF N R +
  fgenesh1_pg.C_Chr_04.0001000291 227 WPYPSEDDKQVLIEMTKLDATQVNNWFINFRKR 259
                                      49***************************9977 PP
2ELK29.81.3e-10180201122
                              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                      +L++ L+rKY++++ +Lk+EF+
  fgenesh1_pg.C_Chr_04.0001000291 180 RLRQDLKRKYASSITMLKTEFM 201
                                      69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-142162IPR005540KNOX1
PfamPF037901.4E-62653IPR005540KNOX1
PfamPF037891.3E-7180201IPR005539ELK domain
SMARTSM011881.6E-4180201IPR005539ELK domain
PROSITE profilePS5007111.029200263IPR001356Homeobox domain
SuperFamilySSF466891.5E-16202268IPR009057Homeodomain-like
SMARTSM003892.1E-7202267IPR001356Homeobox domain
CDDcd000862.36E-9203261No hitNo description
Gene3DG3DSA:1.10.10.604.4E-23205262IPR009057Homeodomain-like
PfamPF059208.1E-15220259IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEAFLGAKAR EACSSESTDS EEMTLAIRAH PMYARLVEAY YECRKIGAHG DAAVALEREK  60
DAMLYSVQVM SEEAYESSAM ALDVASCDLD EFMRDCTHEL ETYVKELHSL YEDAKRCCKS  120
LENRAHKVKT DVVHVDSSRR GEAAESKRHA PATEDELEAV SDDFDQILAS EHQRRNHEER  180
LRQDLKRKYA SSITMLKTEF MRKRKKGKLP DTSTDILKKW WSDNIVWPYP SEDDKQVLIE  240
MTKLDATQVN NWFINFRKRH WIRLFERGCT PKNEKEAATA LAKAFNGSLE KAKDYARSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185205KRKYASSITMLKTEFMRKRKK
2201205RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078964.10.0Homeobox KN domain
TrEMBLA0A454XNE10.0A0A454XNE1_OSTTA; Knotted class 1 homeodomain protein liguleless3
TrEMBLQ01AF40.0Q01AF4_OSTTA; Homeobox KN domain
STRINGQ01AF40.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP545189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-33KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]