PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_gwp_GeneWisePlus.C_Chr_04.00010305
Common NameOt04g03820, OT_ostta04g03620
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 407aa    MW: 44504.3 Da    PI: 4.8301
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_gwp_GeneWisePlus.C_Chr_04.00010305genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-07854441
                                   zf-B_box  4 rkCpeHe...ekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                               ++C+ ++      +++fC +++ +lC+ C    H        H+++p
  estExt_gwp_GeneWisePlus.C_Chr_04.00010305  8 PRCESCPtaaARAATWFCAQDEAYLCDACDAMVHAAngiaskHERRP 54
                                               6899999655334******************9995567888888777 PP
2CCT67.92.7e-23297340144
                                        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                                R ++l+R+keKrk+R+F+K irY+sRKa+A+sRpRvKG+Fv+ +
  estExt_gwp_GeneWisePlus.C_Chr_04.00010305 297 RLERLKRWKEKRKNRNFNKVIRYQSRKACADSRPRVKGKFVRVS 340
                                                889**************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-5555IPR000315B-box-type zinc finger
PfamPF006431.2E-5855IPR000315B-box-type zinc finger
PROSITE profilePS501199.456855IPR000315B-box-type zinc finger
CDDcd000211.09E-6855No hitNo description
PROSITE profilePS5101714.981297339IPR010402CCT domain
PfamPF062033.1E-18297338IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MATGALDPRC ESCPTAAARA ATWFCAQDEA YLCDACDAMV HAANGIASKH ERRPVRGMER  60
DVDSADSRRL SKLTRGEVHV DVTTDDVIGM CDEYLHSSLM PSSSFPVDTL DGAFWDETIG  120
ELDDETEQFL RDEPFGGDVH DGIDTSSPRD GATLIRGVVK PNSSDSHSGE FSGGSDGRSQ  180
KSDISRSDME RLRRIGREDF DSSFLGPILD DSAVKFLEAN PTYGVFGSPS PESRGIGAKA  240
LAAKFGSTSV RFERDDGLMN GVGPKEETDD ASKPATRFDA PPSGSDTYSG MPQPQTRLER  300
LKRWKEKRKN RNFNKVIRYQ SRKACADSRP RVKGKFVRVS SVPDLSKIRE EGIDSEDEDE  360
KDVGRDKIKE LGLDMGMRAP PSMRAIKTGL VGSASMPDFS VYNMDD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7400870.0AY740087.1 Ostreococcus tauri CONSTANS-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078900.10.0Zinc finger, B-box
TrEMBLQ5IFM90.0Q5IFM9_OSTTA; CONSTANS-like protein
STRINGQ5IFM90.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP6111112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.12e-09B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]