PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_16.00010090
Common NameOT_ostta16g01340
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ARR-B
Protein Properties Length: 370aa    MW: 40351 Da    PI: 8.7467
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_16.00010090genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.1e-28212265155
                               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                           kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+++gLt+e+v+SHLQkYRl
  estExt_fgenesh1_pg.C_Chr_16.00010090 212 KPRVVWSAELHTQFVTAVNQL-GIDKAVPKRILDLMGIQGLTRENVASHLQKYRL 265
                                           79*******************.********************************8 PP
2Response_reg83.18.8e-28201281109
                                           EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTT CS
                          Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepk 71 
                                           v++vdD+ l +++++++l+  +y +v++++++e+al++l++++  +D++l D+ mp++dG++ll+ i++e  +
  estExt_fgenesh1_pg.C_Chr_16.00010090  20 VMVVDDDLLCLKVVEKMLKACKY-RVTACSTAESALAILRTRKdeFDIVLSDVHMPDVDGFKLLEIIQFEL-N 90 
                                           89*********************.***************888888**********************9977.* PP

                                           SEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                          Response_reg  72 lpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                           lp+++++a+++++ +l+ +  Ga d+l Kp+ +eel++
  estExt_fgenesh1_pg.C_Chr_16.00010090  91 LPVLMMSANSDSSVVLRGIIHGAVDYLLKPVRIEELRN 128
                                           ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.71E-3317139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-3817164No hitNo description
SMARTSM004481.5E-2918130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.9719134IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2320129IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.59E-2721133No hitNo description
PROSITE profilePS5129410.846209268IPR017930Myb domain
SuperFamilySSF466891.27E-19210269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-30210270IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24212265IPR006447Myb domain, plants
PfamPF002491.4E-7214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGTAPNRLFD SKNFPAGMGV MVVDDDLLCL KVVEKMLKAC KYRVTACSTA ESALAILRTR  60
KDEFDIVLSD VHMPDVDGFK LLEIIQFELN LPVLMMSANS DSSVVLRGII HGAVDYLLKP  120
VRIEELRNIW QHVVRRDYSA RNSGSEDGVN PSSPSKRLKT SGSDSKSEEV ERAANEAGSS  180
KARKKPAGKK GAKGSKEKEA ERKGDAIDSS KKPRVVWSAE LHTQFVTAVN QLGIDKAVPK  240
RILDLMGIQG LTRENVASHL QKYRLYLKRL QGNDLMRNGS NASSSGGVSQ SRAKEQPMTI  300
KGKNVNPFLD DNIFRADDLG LPGDLGNIGY DASFDPSLLA PLDLDKVGKS DVLGADPSDN  360
ILNFFFQGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21209270263ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022840333.10.0Signal transduction response regulator, receiver domain
TrEMBLA0A096P7X70.0A0A096P7X7_OSTTA; Signal transduction response regulator, receiver domain
STRINGA0A096P7X70.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-78response regulator 2
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]