PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_11.00010026
Common NameOT_ostta11g00340
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YC
Protein Properties Length: 250aa    MW: 27104.6 Da    PI: 4.8502
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_11.00010026genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.53.5e-52741752100
                                 NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkr 71 
                                           l+ fw +q   i+ ++dfknh lPlarikki+k+dedv+mis+eaPvl++kace+f+lelt+r+w ha+enkr
  estExt_fgenesh1_pg.C_Chr_11.00010026  74 LREFWREQmmeIQATHDFKNHLLPLARIKKIMKSDEDVRMISSEAPVLFAKACEMFVLELTMRAWAHAQENKR 146
                                           89*****976667899********************************************************* PP

                                 NF-YC  72 rtlkksdiaaavtrtdifdflvdivprde 100
                                           rtl++ diaaa+t+tdifdfl+divprde
  estExt_fgenesh1_pg.C_Chr_11.00010026 147 RTLQRGDIAAAITKTDIFDFLIDIVPRDE 175
                                           ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.89E-3361167IPR009072Histone-fold
PfamPF008084.3E-2296158IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.4E-3896173IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSQDPRDRPS GPPYLHPGMM GMPFPVGAPA MTPEQFQEQY GATLRRHQAQ IAHAVAMNAA  60
ASANPAYAAQ QAKLREFWRE QMMEIQATHD FKNHLLPLAR IKKIMKSDED VRMISSEAPV  120
LFAKACEMFV LELTMRAWAH AQENKRRTLQ RGDIAAAITK TDIFDFLIDI VPRDEAGEGG  180
GDDGENEGPS APQLGALPIF PPQQLVSSIP GVPGTSARPG YAFDFPPPET VEAAPSDSAP  240
PSSVTNDES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5081173395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839887.10.0Transcriptional activator NFYC/HAP5 subunit
SwissprotQ8LCG72e-56NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A090N4A50.0A0A090N4A5_OSTTA; Transcriptional activator NFYC/HAP5 subunit
STRINGA0A090N4A50.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-54nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  4. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  5. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  6. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]