PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_Chr_07.00010219 | ||||||||
Common Name | OT_ostta07g03410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 347aa MW: 38893.2 Da PI: 4.4954 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.5 | 3.3e-17 | 312 | 343 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C +Cgt kTp+WR gp+g+ktLCnaCG+++ k estExt_fgenesh1_pg.C_Chr_07.00010219 312 CLHCGTVKTPQWRMGPEGKKTLCNACGVRFMK 343 99***************************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.3E-6 | 306 | 346 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.81E-12 | 306 | 343 | No hit | No description |
PROSITE profile | PS50114 | 11.701 | 306 | 339 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-13 | 311 | 343 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 312 | 337 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.32E-12 | 312 | 341 | No hit | No description |
Pfam | PF00320 | 1.0E-14 | 312 | 343 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MSDLDESTIE KWIVFEDTDV GVSERAREAG VSERQRSSAV ADTATGLERF DFEVHFDAVF 60 MDKAWSVLNS LPSVAPGVMM MMRESDTGFD RDDEPFLSPE WLDHRTESTA ESDNEGDYAD 120 DEDASRRFAE TVRESAFLHV DDDSFMSGEA PFDYVRGPAD DFPTERATDA PKVDIDFALK 180 SAASLRDDDL EEYERECSAM ERDLVLESQE HFATIADGRV FRVSSELVAP CGKVAKRQLE 240 DSANGEVTEG EDSDADVVAQ VKKVDTKKRR RREEEISIKR AKAFKTIRKD YKAVRATDVF 300 VMANGKKQRR GCLHCGTVKT PQWRMGPEGK KTLCNACGVR FMKGIL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 271 | KKRRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00530 | DAP | Transfer from AT5G25830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003080430.2 | 0.0 | Zinc finger, GATA-type | ||||
TrEMBL | A0A090M3M5 | 0.0 | A0A090M3M5_OSTTA; Zinc finger, GATA-type | ||||
STRING | A0A090M3M5 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP220 | 14 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 3e-15 | GATA transcription factor 12 |
Publications ? help Back to Top | |||
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