PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_Chr_07.00010056 | ||||||||
Common Name | OT_ostta07g00980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | CO-like | ||||||||
Protein Properties | Length: 387aa MW: 42231.2 Da PI: 8.4767 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 16.3 | 2.1e-05 | 6 | 37 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ + + ++l+C ++ lC C + H g estExt_fgenesh1_pg.C_Chr_07.00010056 6 APCEACASRVARLYCAADDAKLCLRCDRAVH-G 37 57**************************999.4 PP | |||||||
2 | CCT | 45.1 | 3.6e-16 | 328 | 371 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++ l+RY K+k R + K+i+Ye+RK++Ae+R Rv GrF+k++ estExt_fgenesh1_pg.C_Chr_07.00010056 328 RKKVLERYHAKKKIRSYGKHIQYEARKVRAETRRRVGGRFAKNE 371 88999*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.627 | 3 | 50 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.8E-10 | 3 | 50 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.36E-7 | 7 | 50 | No hit | No description |
PROSITE profile | PS51017 | 12.511 | 328 | 370 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.6E-12 | 328 | 370 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MAQPRAPCEA CASRVARLYC AADDAKLCLR CDRAVHGANK FAERHVRRWL CGMCSHACAE 60 ITIENGDGLT GTTACERCAQ AFGSEPAATL RPFHECALSE EEYNALGKSA TRRGRPSNRS 120 KAMTHALDAE VSDATFWNLV RKSQLRPSEE PSFDRFDFGR PDTSTNAGSV SAEDDDAFIE 180 GLIRLPSFDL LDQSLGASVP GPRAAAKMSS PTEGYKFSTI FDVSSANDES AASQAMSDEQ 240 VYDAFKATRG NESVDRFLQG TSSGMDDGNN DSLYAFDGGM PKNKPKKIGR PSRKDMVSQE 300 PFPHSMSSTA FFGAEPDSLS KLPGGSARKK VLERYHAKKK IRSYGKHIQY EARKVRAETR 360 RRVGGRFAKN EDKNRPPSEF KGPVPA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022839368.1 | 0.0 | Zinc finger, B-box | ||||
TrEMBL | A0A090N3S1 | 0.0 | A0A090N3S1_OSTTA; Zinc finger, B-box | ||||
STRING | A0A090N3S1 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP7054 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 7e-14 | CONSTANS-like 4 |
Publications ? help Back to Top | |||
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