PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_07.00010056
Common NameOT_ostta07g00980
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 387aa    MW: 42231.2 Da    PI: 8.4767
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_07.00010056genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32.1e-05637436
                              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                                            C+ + +  ++l+C  ++  lC  C  + H g
  estExt_fgenesh1_pg.C_Chr_07.00010056  6 APCEACASRVARLYCAADDAKLCLRCDRAVH-G 37
                                          57**************************999.4 PP
2CCT45.13.6e-16328371144
                                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                           R++ l+RY  K+k R + K+i+Ye+RK++Ae+R Rv GrF+k++
  estExt_fgenesh1_pg.C_Chr_07.00010056 328 RKKVLERYHAKKKIRSYGKHIQYEARKVRAETRRRVGGRFAKNE 371
                                           88999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627350IPR000315B-box-type zinc finger
SMARTSM003362.8E-10350IPR000315B-box-type zinc finger
CDDcd000212.36E-7750No hitNo description
PROSITE profilePS5101712.511328370IPR010402CCT domain
PfamPF062034.6E-12328370IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAQPRAPCEA CASRVARLYC AADDAKLCLR CDRAVHGANK FAERHVRRWL CGMCSHACAE  60
ITIENGDGLT GTTACERCAQ AFGSEPAATL RPFHECALSE EEYNALGKSA TRRGRPSNRS  120
KAMTHALDAE VSDATFWNLV RKSQLRPSEE PSFDRFDFGR PDTSTNAGSV SAEDDDAFIE  180
GLIRLPSFDL LDQSLGASVP GPRAAAKMSS PTEGYKFSTI FDVSSANDES AASQAMSDEQ  240
VYDAFKATRG NESVDRFLQG TSSGMDDGNN DSLYAFDGGM PKNKPKKIGR PSRKDMVSQE  300
PFPHSMSSTA FFGAEPDSLS KLPGGSARKK VLERYHAKKK IRSYGKHIQY EARKVRAETR  360
RRVGGRFAKN EDKNRPPSEF KGPVPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839368.10.0Zinc finger, B-box
TrEMBLA0A090N3S10.0A0A090N3S1_OSTTA; Zinc finger, B-box
STRINGA0A090N3S10.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP705433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.17e-14CONSTANS-like 4
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]