PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_05.00010153
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family GATA
Protein Properties Length: 414aa    MW: 44530.7 Da    PI: 6.8879
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_05.00010153genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.8e-16140174135
                                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                           C+ C+t kTplWR+gp g+ktLCnaCG++++  ++
  estExt_fgenesh1_pg.C_Chr_05.00010153 140 CACCRTQKTPLWRNGPTGSKTLCNACGVRFKAGRV 174
                                           999****************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.3E-12134195IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.191134170IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-11134172No hitNo description
Gene3DG3DSA:3.30.50.106.4E-14138173IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.56E-12139170No hitNo description
PfamPF003201.7E-13140173IPR000679Zinc finger, GATA-type
SuperFamilySSF509984.32E-9244409IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.102.5E-6251404IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRYAQSEGMN DSEAQRRAAM FVSVRPLAYA NEVSDSFEPT TRSAFVQTRN STNEEASQMF  60
DAKPMTESKL MPWARPTYQA LADAQAEAHA HVSRRNERHG SVESDHTTHD GGGPRGEGVR  120
KSVDEEEEDD SPRPEAGVTC ACCRTQKTPL WRNGPTGSKT LCNACGVRFK AGRVVADDNG  180
NVFPLAPQGR KRAVQITPHR GGENYVGPPF KRAKPKHSSS TYTHHLEDGR LWRARDDGAF  240
EATGDVLKLF TGDILRLALC DRAGETLVFC GVADGTVRAF DATKSPADDL GVVGGDETIT  300
RGRVSALCTV NDEWVVSGCH DGVVTTHLAR STRGAAVASR TLDGKVQDIV VLYDGRVIVA  360
GSFGVVVYDC AERLNLVDDA FGGVRSAVRS LAKTANSVIV GSAVGDVFII PYR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838995.11e-147Zinc finger, GATA-type
TrEMBLA0A090N3E21e-146A0A090N3E2_OSTTA; Zinc finger, GATA-type
STRINGA0A090N3E21e-146(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP633544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.19e-13GATA transcription factor 2