PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_Chr_04.00010344

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C2H2

Protein Properties

Length: 1293aa MW: 138180 Da PI: 8.7112

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_Chr_04.00010344	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	798	816	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cg++F+ + L++Hi estExt_fgenesh1_pg.C_Chr_04.00010344 798 RCNVCGRTFKAYDALEQHI 816 7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.014	797	820	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.221	797	825	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	799	820	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.7E-8	1051	1086	No hit	No description
SMART	SM00451	6.1E-4	1054	1088	IPR003604	Zinc finger, U1-type
SMART	SM00355	13	1057	1081	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	7.2E-6	1058	1081	No hit	No description
PROSITE pattern	PS00028	0	1059	1081	IPR007087	Zinc finger, C2H2
SuperFamily	SSF55315	1.16E-17	1119	1253	IPR029064	50S ribosomal protein L30e-like
Gene3D	G3DSA:3.30.1330.30	7.2E-14	1151	1251	IPR029064	50S ribosomal protein L30e-like
Pfam	PF01248	1.3E-12	1152	1241	IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005840	Cellular Component	ribosome
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1293 aa Download sequence Send to blast
MDGVGTTHWM ARAAPVSAAP TPAQVKAGND PGGGIVVARG SFVNAVANVE AVVIVGGLTE 60 DTLYYVSTVG ESGGTSPTLQ STTQTLSVRT ADESAPTIGS FTYAANGNEI ALTVTLSDED 120 GTVYYVLQHV GVPAPSVQQV LDGKNSSALP AISSGNMQLI RNVPRTIDTT GAVGLVLGAQ 180 YTAHYVAVDT LGNKPSAVSS TNVNTSPMPP APNPPPSPPA PSPPPPPPLV ASPPPPSPPP 240 SPPPTPETDA PVFTTGFPKV DTATNSSFKL HAAMNERGVL YFAVFEGTLA QITAPTGAAL 300 KAQTALVSDP ALRHIGVMYL SASTTASRTF NSLKPGGKYV VFAVGEDDLA NMMSTVTSMD 360 IELLDDVAPT STWSATLSGT QLTINATSTE KGMVYYVCST DLMANLSPND VKNAADIRPR 420 VFRHGSFELK NENVQEYVTL NVGYGRDFIV HILVEDKSGN HVNVERSRRI VTLTAPPPPP 480 PAPSPPPALR VERDEDLMIS MFVLTYSALA LVILYVLVRA CSQYGMASYR ANMSIRRRYM 540 AKKMTRASMT AGVARDLVDA LNAREDVARA VASVVCSTGA RALPSDVVVS LGFRSHDFVN 600 DANWDDSLTT EERRTVLRYV NACPEIFHAF ASTAHVGTGG ETRCSRFARG VAADVAERAA 660 AFAKAHGART MEDPDDLRGK ATRDGGRGDG RGGAKDAGDR NGGKRAAPRA APRAATPATP 720 APWLAASATR SSDVAEAKPT TSLKDIMALE SRQSSRPIPS TRADTRTRAA APKLPVITAE 780 LLRRESRRSV MDKFGKVRCN VCGRTFKAYD ALEQHIGASH YGLNNPEAKA LETALIAAGL 840 APAGGDGKNR VSLKLGDLVS STTKTSNSMV NSLAAYFKTE KQTSQRAEKK EGNIHGGQFV 900 RSTNMASTSG MVLRRGVERR DGKKKKRSTL KKIILADRAL RREAETDKNA TVDEVEVEVE 960 VRVGWVYVVL EFVENEDVRV RLMCMEDDPN DKDGSSTDEG EDEDAERDDA GDGVSTKEKL 1020 EVIEARAPAG AWGVRSLADV LKGAEPKAPP KVKQEARTCE VCNVQCFGER AWEAHIAGKV 1080 HAKKLSFRDD PEAAKKAALS AKSSTTYVGT EGMENARHAN QIITEELNEA TTALLSTLKR 1140 FQDRLYHTDK IKAKQRRRLL YGLREVAKSV DAKTSKVVII APNIEKIESE GGLDDRIQAI 1200 IADAREKEVP VVFALTKRRI GKALNIQAVS IVSVLDYNGA DEEYKKAVKL AAEGRALYIK 1260 HKQANTVVEQ PMAKQPAQLS LAAVEFIPIG AR*

Sequence ? help Back to Top

Protein Sequence Length: 1293 aa Download sequence Send to blast

MDGVGTTHWM ARAAPVSAAP TPAQVKAGND PGGGIVVARG SFVNAVANVE AVVIVGGLTE  60
DTLYYVSTVG ESGGTSPTLQ STTQTLSVRT ADESAPTIGS FTYAANGNEI ALTVTLSDED  120
GTVYYVLQHV GVPAPSVQQV LDGKNSSALP AISSGNMQLI RNVPRTIDTT GAVGLVLGAQ  180
YTAHYVAVDT LGNKPSAVSS TNVNTSPMPP APNPPPSPPA PSPPPPPPLV ASPPPPSPPP  240
SPPPTPETDA PVFTTGFPKV DTATNSSFKL HAAMNERGVL YFAVFEGTLA QITAPTGAAL  300
KAQTALVSDP ALRHIGVMYL SASTTASRTF NSLKPGGKYV VFAVGEDDLA NMMSTVTSMD  360
IELLDDVAPT STWSATLSGT QLTINATSTE KGMVYYVCST DLMANLSPND VKNAADIRPR  420
VFRHGSFELK NENVQEYVTL NVGYGRDFIV HILVEDKSGN HVNVERSRRI VTLTAPPPPP  480
PAPSPPPALR VERDEDLMIS MFVLTYSALA LVILYVLVRA CSQYGMASYR ANMSIRRRYM  540
AKKMTRASMT AGVARDLVDA LNAREDVARA VASVVCSTGA RALPSDVVVS LGFRSHDFVN  600
DANWDDSLTT EERRTVLRYV NACPEIFHAF ASTAHVGTGG ETRCSRFARG VAADVAERAA  660
AFAKAHGART MEDPDDLRGK ATRDGGRGDG RGGAKDAGDR NGGKRAAPRA APRAATPATP  720
APWLAASATR SSDVAEAKPT TSLKDIMALE SRQSSRPIPS TRADTRTRAA APKLPVITAE  780
LLRRESRRSV MDKFGKVRCN VCGRTFKAYD ALEQHIGASH YGLNNPEAKA LETALIAAGL  840
APAGGDGKNR VSLKLGDLVS STTKTSNSMV NSLAAYFKTE KQTSQRAEKK EGNIHGGQFV  900
RSTNMASTSG MVLRRGVERR DGKKKKRSTL KKIILADRAL RREAETDKNA TVDEVEVEVE  960
VRVGWVYVVL EFVENEDVRV RLMCMEDDPN DKDGSSTDEG EDEDAERDDA GDGVSTKEKL  1020
EVIEARAPAG AWGVRSLADV LKGAEPKAPP KVKQEARTCE VCNVQCFGER AWEAHIAGKV  1080
HAKKLSFRDD PEAAKKAALS AKSSTTYVGT EGMENARHAN QIITEELNEA TTALLSTLKR  1140
FQDRLYHTDK IKAKQRRRLL YGLREVAKSV DAKTSKVVII APNIEKIESE GGLDDRIQAI  1200
IADAREKEVP VVFALTKRRI GKALNIQAVS IVSVLDYNGA DEEYKKAVKL AAEGRALYIK  1260
HKQANTVVEQ PMAKQPAQLS LAAVEFIPIG AR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003079049.1	0.0	Ribosomal protein L7Ae/L30e/S12e/Gadd45
TrEMBL	Q01A69	0.0	Q01A69_OSTTA; Ribosomal protein L7Ae/L30e/S12e/Gadd45
STRING	Q01A69	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP765	5	5