PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_03.00010272
Common NameOt03g03680, OT_ostta03g03730
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 316aa    MW: 34971.3 Da    PI: 10.3461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_03.00010272genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.83e-09117161251
                                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                            y+GV+  +++g++ A+I +      rk+ +lg f ++eeAa+a+++a+ 
  estExt_fgenesh1_pg.C_Chr_03.00010272 117 AYRGVSLLRQTGKFHAQINVQ-----RKQLHLGFFFSEEEAARAYDRAAI 161
                                           69*****************93.....5*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-10116162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-10117174IPR001471AP2/ERF domain
SMARTSM003801.0E-5117182IPR001471AP2/ERF domain
PROSITE profilePS5103212.049117176IPR001471AP2/ERF domain
PfamPF008473.0E-4117162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MKVEELPIGV PRIQTARRAP RAEDAAMGTF GNGASPSESE TVGTPGTGME GAQWIERSRM  60
RRERSGLKSR TESSETDSER SSEGDNLTLR SIEPKPVNER VTNVKATARR HDSRTSAYRG  120
VSLLRQTGKF HAQINVQRKQ LHLGFFFSEE EAARAYDRAA IFKASVEGGA ICTNMDINDY  180
KDEIPMLQSL TQRELLELLH KMKVKSNEAS APNSPRKASK PRAKSLQREC RTSHSEHSET  240
EHVTIRVDAA EPPSSPRFDA LSTAVGFVEH SRELSVGRIA ASVQIISNTC PTVVDMHVSK  300
RRRTRIWPRQ APAAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863RMRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078279.10.0DNA-binding domain
TrEMBLA0A454Y0G40.0A0A454Y0G4_OSTTA; APETALA2-like protein 2
TrEMBLQ01CD40.0Q01CD4_OSTTA; DNA-binding domain
STRINGQ01CD40.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP801966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.11e-07target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]