PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_Chr_01.00010348
Common NameOT_ostta01g04970
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 498aa    MW: 52929.4 Da    PI: 10.7124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_Chr_01.00010348genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.2e-11392431344
                                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
                       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                           +W++++ el+++a +q+G++ +++Iar ++ gRt+ q+k ++
  estExt_fgenesh1_pg.C_Chr_01.00010348 392 KWSKDDTELFYRAMTQFGTD-FSLIARLFP-GRTRRQVKRKY 431
                                           8*******************.*********.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.5E-25383467No hitNo description
Gene3DG3DSA:1.10.10.603.5E-7387431IPR009057Homeodomain-like
PROSITE profilePS5129310.187388439IPR017884SANT domain
SMARTSM007177.8E-9389437IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-11391434IPR009057Homeodomain-like
CDDcd001672.76E-8392431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDDTAPDVDA RARDEGTTAN ATANATENAT DATDAARAGR PWTETTPRRR ERAFAPNVRG  60
TGVKVRARTS GEIGASVDGK KRARETDGGD RDGGGASARP ASRLGKSVES ASEGEGRKKS  120
RLTAVVPSVV GSGSRLRTAR ESATPAPERP RTPTTHASQA TMSGSPAVRG QTPLGLRSPA  180
PSRTSKQLVP AASRIEAKLS PIVPAPPLAL PHGGVAPVDP LSSPGALALV VPPPVMAVPA  240
HRWVRSAGST RGGRVGEGSR RDLLEATTSY DNDPAMTIRD IIRQKSAEER ANEAKSRMLK  300
KSKLKAASDF GKKRTPEPAA PVALPGKSFA PKPTVMAPQV QVIDGNIVIN PHSLTVAAAA  360
EKSSGLDEFK RVEENGTKLN SATYANRAKA EKWSKDDTEL FYRAMTQFGT DFSLIARLFP  420
GRTRRQVKRK YLIEDRADPR RVERCISNRE TDPAIYKALI SVLQEQAAEA DLARSNIDAR  480
VVLDGDAGEE STEQASH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5n9g_C1e-1333547122158Transcription factor TFIIIB component B'' homolog
5n9g_H1e-1333547122158Transcription factor TFIIIB component B'' homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423429RRQVKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003074551.20.0SANT/Myb domain
TrEMBLA0A090N2T90.0A0A090N2T9_OSTTA; SANT/Myb domain
STRINGA0A090N2T90.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP377099
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-18MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]