PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.13.00.306.1 | ||||||||
Common Name | OT_ostta13g00110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 98aa MW: 11286.8 Da PI: 10.4546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.8 | 2.4e-13 | 1 | 41 | 7 | 47 |
HHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqky 47 +Ede l + +++lGg+ +W++Ia+ ++ gR+ k+c++rw + e_gw1.13.00.306.1 1 QEDEMLREQIERLGGPgNWTAIAEALP-GRSSKSCRLRWCNQ 41 6**************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.5 | 6.3e-18 | 48 | 92 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEd ++ ++ +G++ W+ I+r+m+ gRt++q+k+r+++ e_gw1.13.00.306.1 48 RGPFTPEEDNTILMQHAIHGNK-WAVISRYMP-GRTDNQVKNRFNST 92 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 8.25E-10 | 1 | 40 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 1 | 49 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-5 | 1 | 44 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-12 | 1 | 41 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 14.46 | 1 | 42 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.88E-29 | 22 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.313 | 43 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-16 | 47 | 95 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 48 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.73E-12 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-25 | 50 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
QEDEMLREQI ERLGGPGNWT AIAEALPGRS SKSCRLRWCN QLNPNVKRGP FTPEEDNTIL 60 MQHAIHGNKW AVISRYMPGR TDNQVKNRFN STLRRLIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3zqc_A | 2e-27 | 2 | 98 | 9 | 104 | MYB3 |
3zqc_D | 2e-27 | 2 | 98 | 9 | 104 | MYB3 |
3zqc_G | 2e-27 | 2 | 98 | 9 | 104 | MYB3 |
3zqc_J | 2e-27 | 2 | 98 | 9 | 104 | MYB3 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022840149.1 | 5e-67 | SANT/Myb domain | ||||
Swissprot | Q42575 | 2e-36 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | A0A090M726 | 1e-65 | A0A090M726_OSTTA; SANT/Myb domain | ||||
TrEMBL | A0A1Y5IDH0 | 2e-65 | A0A1Y5IDH0_OSTTA; MYBY1 protein | ||||
STRING | A0A090M726 | 2e-66 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 8e-39 | myb domain protein 1 |
Publications ? help Back to Top | |||
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