PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.10.00.278.1
Common NameDp
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 334aa    MW: 36603.2 Da    PI: 7.3264
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.10.00.278.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.52.7e-2467146171
            E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r++k+Lr+++++   ++ek+ee  ++++neva+eLv+e            d+kn rRR+YD+lNV+ea+++i+k +k+ei w+g
  e_gw1.10.00.278.1  67 REQKGLRHFSMR---VCEKVEEkMHTSYNEVANELVEElrlaaqqantefDEKNVRRRVYDALNVIEAVGIITK-KKKEIFWSG 146
                        689*********...*******99**************************************************.9******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.7E-1001333IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.7E-3665149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.4E-2967146IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.6E-2269146IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.54E-1969147IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.74E-35179276IPR014889Transcription factor DP, C-terminal
SMARTSM011383.8E-52183332IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.32E-28187278No hitNo description
PfamPF087814.1E-25188277IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQAAAKYVIE ARASIADARA SLRARGDASA RDEVDAMYST PKASTSARKT PAGQTPTTPS  60
AQTPGEREQK GLRHFSMRVC EKVEEKMHTS YNEVANELVE ELRLAAQQAN TEFDEKNVRR  120
RVYDALNVIE AVGIITKKKK EIFWSGYPPG CMKPGELPPK RAGTTGTPEA TTPRTAAPTW  180
ATSEAGIEEF EKKVNHLAEL VEQHDAIIAL VDRNREAMAK SNGAPITGIQ LPFILIQTKA  240
DAEVDVEISE DQRHVHLDFN QTPFQIHDGF HVLTKMIKQH PIRIPREDAG PSGLDTTGKS  300
TETNEEPAVK RKTTAASPLE ENTGVTGKRT KKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-2565148590PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118139RRRVYDALNVIEAVGIITKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6751050.0AY675105.1 Ostreococcus tauri transcription factor Dp (Dp) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022839768.10.0Transcription factor DP
TrEMBLQ5SCA90.0Q5SCA9_OSTTA; Transcription factor Dp
STRINGA0A090M9E20.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-49Transcription factor DP
Publications ? help Back to Top
  1. Robbens S, et al.
    Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri.
    Mol. Biol. Evol., 2005. 22(3): p. 589-97
    [PMID:15537805]