PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.05.00.32.1 | ||||||||
Common Name | OT_ostta05g00460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 756aa MW: 85111.3 Da PI: 5.9283 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.3e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W+++++ ++ ++++kqck rw+ +l e_gw1.05.00.32.1 8 GVWKNTEDEILKAAVMKYGKNQWSRVSSLLN-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 33.6 | 8.9e-11 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l e_gw1.05.00.32.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPVVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.227 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 4 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.1E-14 | 10 | 70 | No hit | No description |
CDD | cd00167 | 1.58E-11 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 3.95E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 4.65E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-14 | 58 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-13 | 58 | 105 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.283 | 58 | 107 | IPR017930 | Myb domain |
Pfam | PF11831 | 2.6E-34 | 399 | 606 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MRIQIKGGVW KNTEDEILKA AVMKYGKNQW SRVSSLLNRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPVVGR TPSQCLERYE KLLDAACAKD EDYDAGDDPR 120 RLRPGEIDPN PETKPAKPDA VDMDEDEKEM LAEARARLAN TKGKKAKRKA REKQLEEARR 180 LAELQKKREL KAAGIAHVRK AKRVRGVDYN AEIAFERKPD AVMYDTREED EAFAKMQAAK 240 VFKPISLAEL EGKKSAKEMD EANKKLAEAR QKMQERRDMP GAVQQNLKAN DASFTRRSKL 300 LLPTPQVSDR ELEDIAKMGK GVSGLLDDGG TTPASALLSS YEQTPATSTA RTPMRTPMVE 360 GDAILREAQQ QAARRNQKST LFGGGEEAAA LMPTDFAGAT PSRTRATPTP SRSEVSSQMG 420 TTPLLHGQTP IRDGLHINDQ YAAHFTDLSE RERRAHAAST SASLKGAFMS LPKPQNEYQV 480 DLPEAEEMED ELMEDAIVED EADARARQAA ALAEYEAMQM RKRSRAVQLD LPRPTEMVVV 540 EPLAGDAMSK LVNDEATDLL AHDVAKYSKN TRPAVSIEEF DESLMTNARE LIEAEAQEML 600 REQNSSREDF ADAFIAALVE ERKKNIFVPS LNSNISVDEA TEEQRLEAAK ACFESLRRDM 660 EKDAKRASKL EQKCNLLTAG LQKRDGELRQ KLKKTVDEIQ SLAIEAESFA MLHEQEQRAA 720 PERIEYWLEL VQAARAREKL LQEKYSQLTR ELNAR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
5xjc_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
5yzg_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
5z56_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
5z57_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
5z58_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
6ff4_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
6ff7_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
6icz_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
6id0_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
6id1_L | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
6qdv_O | 1e-179 | 2 | 751 | 3 | 794 | Cell division cycle 5-like protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003079144.2 | 0.0 | Domain of unknown function DUF3351 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A090M0R5 | 0.0 | A0A090M0R5_OSTTA; Uncharacterized protein | ||||
STRING | A0A090M0R5 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1040 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 1e-175 | cell division cycle 5 |
Publications ? help Back to Top | |||
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