PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.03.00.529.1
Common NameOT_ostta03g02220
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family AP2
Protein Properties Length: 204aa    MW: 23275.2 Da    PI: 10.869
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.03.00.529.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.7e-101679155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng......kr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s+ kGV+ +k + rW+A+++d   e ++      +r ++++lg + ++ +Aa+a++ a ++++g
  e_gw1.03.00.529.1 16 SKWKGVTKHKITSRWEAHLWDaTFErRKssksgrQRgRQVYLGGWQSELDAARAYDLASLRYFG 79
                       5679*****************8888755787776448**********99***********9987 PP
2AP234.16.8e-11122175154
                AP2   1 sgykGVrwdkkrgr...WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        s+++GV+ +k +++   W+A+I  +     +k+ +lg+f ++  Aa+a++ a+++++
  e_gw1.03.00.529.1 122 SRFRGVTSHKGKNSkgkWEARIGRVMG---NKYLYLGTFPSERAAAEAYDLAALRFR 175
                        68999988875555666****988533...4**********99***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-111688IPR016177DNA-binding domain
PROSITE profilePS5103216.0541787IPR001471AP2/ERF domain
PfamPF008471.3E-51778IPR001471AP2/ERF domain
SMARTSM003801.2E-121793IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-101788IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-14122186IPR016177DNA-binding domain
PfamPF008476.3E-7122175IPR001471AP2/ERF domain
SMARTSM003804.0E-24123190IPR001471AP2/ERF domain
PROSITE profilePS5103216.963123184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-14123185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0009845Biological Processseed germination
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0040019Biological Processpositive regulation of embryonic development
GO:0042127Biological Processregulation of cell proliferation
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKKKAQIAPK GSSRSSKWKG VTKHKITSRW EAHLWDATFE RRKSSKSGRQ RGRQVYLGGW  60
QSELDAARAY DLASLRYFGT RSPLNFPREN YADELKIMQE YTCADWVAEI RRKSSGFSRG  120
RSRFRGVTSH KGKNSKGKWE ARIGRVMGNK YLYLGTFPSE RAAAEAYDLA ALRFRDSKAV  180
TNFDRSNYSE EDIKNAANDA KIV*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003078132.21e-147DNA-binding domain
SwissprotQ6PQQ31e-57AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A090M4P61e-146A0A090M4P6_OSTTA; DNA-binding domain
STRINGA0A090M4P61e-147(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.37e-37AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]
  3. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  4. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  5. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  6. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]