PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.01.00.699.1 | ||||||||
Common Name | OT_ostta01g05160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 69aa MW: 8157.51 Da PI: 9.2004 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.9 | 4.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri +++nrqvtf+kR+ng++KKA ELSvLCd ++a++i+ s+ kly yss e_gw1.01.00.699.1 9 ERIGDERNRQVTFTKRKNGLMKKAMELSVLCDCDIAMVIYNSHEKLYQYSS 59 6899*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-29 | 1 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.2E-32 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MGRKKIKIER IGDERNRQVT FTKRKNGLMK KAMELSVLCD CDIAMVIYNS HEKLYQYSSG 60 EIEDVLERF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-29 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP000581 | 1e-63 | CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_001415963.1 | 3e-40 | predicted protein | ||||
Refseq | XP_022838327.1 | 2e-39 | Transcription factor, MADS-box | ||||
Swissprot | O55087 | 2e-28 | MEF2B_MOUSE; Myocyte-specific enhancer factor 2B | ||||
TrEMBL | A0A1Y5HYX6 | 3e-43 | A0A1Y5HYX6_OSTTA; Uncharacterized protein (Fragment) | ||||
STRING | ABO94255 | 1e-39 | (Ostreococcus 'lucimarinus') | ||||
STRING | A0A090LYG5 | 6e-39 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3656 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 9e-24 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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