PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 1800010021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C3H | ||||||||
Protein Properties | Length: 249aa MW: 27532.9 Da PI: 9.2044 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.9 | 6.3e-07 | 59 | 84 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lCr+f+ C+yG+rC FaHg+ 1800010021 59 KTRLCRHFQSPEGCRYGERCFFAHGE 84 8***********************96 PP | |||||||
2 | zf-CCCH | 33.6 | 6.4e-11 | 204 | 230 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C + +G C +Gd+C+FaHg+ 1800010021 204 YKTKICVSWINNGSCTFGDNCHFAHGE 230 9************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-15 | 52 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 57 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.005 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.328 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-5 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 9.0E-9 | 109 | 181 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.76 | 110 | 176 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 2.05E-13 | 112 | 180 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 4.6E-11 | 115 | 177 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 4.5E-13 | 115 | 180 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.82E-11 | 115 | 177 | No hit | No description |
SMART | SM00356 | 3.0E-6 | 203 | 230 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.211 | 203 | 231 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.26E-9 | 203 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-7 | 204 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-13 | 204 | 234 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
XXRRTGCARI LQHSRVRVRD DCHFLHTYRA GLTLPSRPAP LPYVYAVNAH GMHMNEKVKT 60 RLCRHFQSPE GCRYGERCFF AHGEAELRTE EFNIATGIGM PGCGTGSAFE QCVLVPVPQA 120 HVGTVVGKAG SNIARTSSES GAKVSMLSAE YTNSDGSRLC RVVGTPLDVQ KAKDMIEHRL 180 VIARRKKRDD GKSLRDDKSS MKPYKTKICV SWINNGSCTF GDNCHFAHGE VQLQKRFGND 240 ENVESIVL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003084052.2 | 1e-173 | Zinc finger, CCCH-type | ||||
TrEMBL | A0A096P9K7 | 1e-171 | A0A096P9K7_OSTTA; Zinc finger, CCCH-type | ||||
TrEMBL | A0A454XTM7 | 1e-171 | A0A454XTM7_OSTTA; Uncharacterized protein | ||||
STRING | A0A096P9K7 | 1e-172 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP13475 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 5e-14 | C3H family protein |