PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 1500010069 | ||||||||
Common Name | OT_ostta15g00690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | MYB | ||||||||
Protein Properties | Length: 444aa MW: 47694.3 Da PI: 10.634 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.7 | 2.3e-07 | 210 | 262 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +W+ E e lv++v+ +G g+W+ I + +R++ ++k++w+++l 1500010069 210 PWSLPEVEALVRGVAHYGRGQWADIKALRLdgvsetlINRSAVDLKDKWRNLL 262 8*******************666665555455555555*************96 PP | |||||||
2 | Myb_DNA-binding | 22.8 | 2.1e-07 | 347 | 396 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E lvd+v + Gg +W+ I + +Rt+ ++k++w+++l 1500010069 347 SPWTMKEAMALVDGVDRCGGCRWTVIKKSDDpalGRRTAMDLKDKWRNLL 396 58*************************98777777*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.295 | 203 | 266 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.54E-13 | 206 | 264 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-6 | 207 | 264 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.39E-18 | 209 | 263 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-12 | 209 | 263 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-6 | 210 | 262 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.435 | 341 | 400 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 343 | 397 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0018 | 345 | 398 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.38E-14 | 348 | 423 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.49E-17 | 348 | 396 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MGWGARGGDD ARAVCAVAAF GVAPVPSARP VGVAPPVRTT TKSLSASDGS HNTTHLDGDG 60 EDAPAIEDCA STERLTQRQD AHFSGRAGHG LAVMIPQTSF DQVPLALRNA RLDALAIPDR 120 SQTPGVKSPF SAANVLLNMM ACGSDEENEA PGTRGNKRDS LHPLSVPCPK KRRTSKSLRA 180 RSNLNTLNVD AKPEAAAEAH ASGKPKAHRP WSLPEVEALV RGVAHYGRGQ WADIKALRLD 240 GVSETLINRS AVDLKDKWRN LLRVAVLPAL YKRREINGVP AEILERVRVL ASAKVEARVG 300 KHGAPRDAVG KGMSVATVKM SSPGQSDADK TEDDAGAKGV RRSKHHSPWT MKEAMALVDG 360 VDRCGGCRWT VIKKSDDPAL GRRTAMDLKD KWRNLLQLAS LPPQSRRKQE TPADFLQRVL 420 DLEAKYGGAR RKGRKPVNKM AQA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 174 | PKKRRTS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022841110.1 | 0.0 | SANT/Myb domain | ||||
TrEMBL | A0A096PAD8 | 0.0 | A0A096PAD8_OSTTA; SANT/Myb domain | ||||
TrEMBL | A0A454Y0D4 | 0.0 | A0A454Y0D4_OSTTA; Uncharacterized protein | ||||
STRING | A0A096PAD8 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1276 | 9 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-13 | TRF-like 6 |
Publications ? help Back to Top | |||
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