PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1400010185
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YC
Protein Properties Length: 570aa    MW: 61946.7 Da    PI: 7.2039
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1400010185genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.73.3e-154064871596
       NF-YC  15 dfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 d  + +lP+ar+++i+k d+dvk+ saea   ++ka elf+  l+  s    + +krr ++  d+++ v r  +++fl d+v
  1400010185 406 DPSDITLPVARVRRIIKLDKDVKQASAEAIKCVTKAVELFMEGLAEGSHQGMRAAKRRGVHYRDLENFVMRRGKYEFLHDHV 487
                 556779**************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF038767.8E-1018121IPR005576RNA polymerase Rpb7, N-terminal
SuperFamilySSF470951.3E-6293364IPR009071High mobility group box domain
PROSITE profilePS501188.832304378IPR009071High mobility group box domain
CDDcd000842.52E-7305374No hitNo description
Gene3DG3DSA:1.10.30.103.4E-5306362IPR009071High mobility group box domain
PfamPF090117.1E-6307373IPR009071High mobility group box domain
SuperFamilySSF471137.86E-15398493IPR009072Histone-fold
PfamPF008082.6E-11411471IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-18412487IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0003899Molecular FunctionDNA-directed RNA polymerase activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MPARGRESSA VTRKRCVFTV AVHPSALGDP LRGARVVIDG LRMRHVAALG GVLMACDDAR  60
LTGVEDVEDD GSNDDDASNG CAHFEGDRGG KGDAVSTRAH GRVLHASGHV DVCVEADCDV  120
FTPVRGSRLV GTVNKIAHDF IGALVLDKFN VAIAAGDIRE ELVSESEECW RSAWDASHAI  180
RVGSQIVFTV KAVTESDDVV LLRGSMKDSD TGEREYVARS SSGITSIEQK LAPPEKCAKK  240
EKKEKKEKKE KKEKKEKKEK EASKNGRVSA LCNADIRLVD SNRLARRLRH PHFGSRVRLD  300
AMAFPKKISA YMAYSNVHRD AVKRGLIESG VEKPSIADVA RAISARWNAL SDDERAVRTM  360
RARCTRAALK AEQEAAYETA KAAAIARGET PEEKGAGDAS GDGDKDPSDI TLPVARVRRI  420
IKLDKDVKQA SAEAIKCVTK AVELFMEGLA EGSHQGMRAA KRRGVHYRDL ENFVMRRGKY  480
EFLHDHVWAM RPRETVGEGG DDDDEDEETA SAKKAKKLAD AAGSKRVTDF FQTGPSPVKK  540
PRSEEIDIDD DAPAEDASAG VVVPETEVQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y5I9321e-161A0A1Y5I932_OSTTA; DNA polymerase epsilon, subunit C
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP261633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.17e-11nuclear factor Y, subunit C10