PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 1200010282
Common NameOT_ostta12g02780
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family G2-like
Protein Properties Length: 271aa    MW: 28901 Da    PI: 10.6586
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
1200010282genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-2854107255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 +rlrWtpeLH++F++av+qLGG e AtPk i  lm   g+tl+h+kSHLQkYRl
  1200010282  54 ARLRWTPELHAEFLKAVHQLGGLELATPKGIATLMTTSGMTLQHIKSHLQKYRL 107
                 79***************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.01750110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2553108IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2254108IPR006447Myb domain, plants
SuperFamilySSF466893.05E-1454107IPR009057Homeodomain-like
PfamPF002494.8E-855106IPR001005SANT/Myb domain
PfamPF143798.7E-10223263IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
XXRAGGASTS TSRGRARGKE RAETEQVKRK RGKGDGTGER GSGVTGRKNP RGAARLRWTP  60
ELHAEFLKAV HQLGGLELAT PKGIATLMTT SGMTLQHIKS HLQKYRLQEL GGATRTPAGD  120
DTAERARRAM IKRARQEQAE ELARRASSGD LAAYEAASTP TSAGNLSELI HSQFASPDAT  180
PDERSLDAIL ARASTDPVSA SAALGASLGV DVNDVDIKSM PKVGQALLKQ LEMQKQLHDQ  240
LLTQRRLETA IAEHSKYIAS MLAGDTPPRS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-1952106155Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003082428.20.0MYB-CC type transcription factor,LHEQLE-containing domain, partial
TrEMBLA0A090MB550.0A0A090MB55_OSTTA; MYB-CC type transcription factor,LHEQLE-containing domain (Fragment)
STRINGA0A090MB550.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.12e-19phosphate starvation response 1
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]