PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 1200010282 | ||||||||
Common Name | OT_ostta12g02780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | G2-like | ||||||||
Protein Properties | Length: 271aa MW: 28901 Da PI: 10.6586 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.9 | 4.7e-28 | 54 | 107 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtpeLH++F++av+qLGG e AtPk i lm g+tl+h+kSHLQkYRl 1200010282 54 ARLRWTPELHAEFLKAVHQLGGLELATPKGIATLMTTSGMTLQHIKSHLQKYRL 107 79***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.017 | 50 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 53 | 108 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-22 | 54 | 108 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.05E-14 | 54 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-8 | 55 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.7E-10 | 223 | 263 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
XXRAGGASTS TSRGRARGKE RAETEQVKRK RGKGDGTGER GSGVTGRKNP RGAARLRWTP 60 ELHAEFLKAV HQLGGLELAT PKGIATLMTT SGMTLQHIKS HLQKYRLQEL GGATRTPAGD 120 DTAERARRAM IKRARQEQAE ELARRASSGD LAAYEAASTP TSAGNLSELI HSQFASPDAT 180 PDERSLDAIL ARASTDPVSA SAALGASLGV DVNDVDIKSM PKVGQALLKQ LEMQKQLHDQ 240 LLTQRRLETA IAEHSKYIAS MLAGDTPPRS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-19 | 52 | 106 | 1 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003082428.2 | 0.0 | MYB-CC type transcription factor,LHEQLE-containing domain, partial | ||||
TrEMBL | A0A090MB55 | 0.0 | A0A090MB55_OSTTA; MYB-CC type transcription factor,LHEQLE-containing domain (Fragment) | ||||
STRING | A0A090MB55 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 2e-19 | phosphate starvation response 1 |
Publications ? help Back to Top | |||
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