PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 1200010147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | G2-like | ||||||||
Protein Properties | Length: 206aa MW: 22761.8 Da PI: 10.6857 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.4 | 2.9e-27 | 76 | 128 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rl+Wtp LH++Fv ve+L G + A+Pk+i+++m+v+gLt+e+v+SHLQkYR+ 1200010147 76 ARLVWTPALHAQFVAPVEKL-GVDAAVPKSIMKIMNVEGLTRENVASHLQKYRI 128 79******************.********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.609 | 72 | 131 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.35E-18 | 74 | 132 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 74 | 132 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-22 | 76 | 128 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-6 | 78 | 127 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGQINRRARR SQPLSSGVTH CRVVSIVVSW SHPLSSGFDR RLVVSLKPGF DYFRVVSPIV 60 GLTGGCVATA ELRKRARLVW TPALHAQFVA PVEKLGVDAA VPKSIMKIMN VEGLTRENVA 120 SHLQKYRINL KRKKFSSEST EGLDDTDGDT RSMRKKNKAE AGDSDRGSGP TTNGSDDDVT 180 TRKLSSSCYG EETRHESKRR VREYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-22 | 75 | 131 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003082291.2 | 8e-99 | Myb domain, plants | ||||
TrEMBL | A0A090MAV9 | 2e-97 | A0A090MAV9_OSTTA; Myb domain, plants | ||||
STRING | A0A090MAV9 | 3e-98 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59570.1 | 3e-25 | G2-like family protein |