PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 0800010292 | ||||||||
Common Name | OT_ostta08g02980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 33669.9 Da PI: 8.2712 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.3e-05 | 158 | 179 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cgk Fs+k + +rH + H 0800010292 158 CGVCGKAFSTKQMQERHEDSaH 179 *****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 25 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 121 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.9 | 156 | 179 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 156 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.2E-4 | 158 | 175 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 158 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.088 | 186 | 211 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.951 | 186 | 216 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 188 | 211 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.76E-8 | 209 | 243 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-11 | 209 | 244 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.015 | 217 | 241 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 217 | 246 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 219 | 241 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGRRREHGLW RRRFLNELSS ATAHAECTLA DACELAYGCE RLREVFRRAH GAENEDGDVA 60 AALGEIRGLL KVVDEETYAR GIDGDAHVAI EGDEPMGERG RGRAGARRAE CPFCKKKFVE 120 SHLPSHVAKQ HTGARPVKCS HVGCDEYFAD ERAMRRHCGV CGKAFSTKQM QERHEDSAHA 180 ERKKTIPCPV DGCTVMFSNV GSISDHMKRA HSNAKPYACT YPGCSAKFAT SSDKARHFRT 240 HFGDNARPGA ASRSMSVHLS QSRSELVRKR ARARSFEDDL VPELTDPSLM SKWLLVGGDE 300 ASEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 2e-13 | 135 | 241 | 4 | 117 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022841017.1 | 0.0 | Zinc finger C2H2-type/integrase DNA-binding domain | ||||
TrEMBL | A0A090M8Q1 | 0.0 | A0A090M8Q1_OSTTA; Zinc finger C2H2-type/integrase DNA-binding domain | ||||
STRING | A0A090M8Q1 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 1e-13 | transcription factor IIIA |
Publications ? help Back to Top | |||
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