PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 0800010130 | ||||||||
Common Name | OT_ostta08g01330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | YABBY | ||||||||
Protein Properties | Length: 255aa MW: 29533.1 Da PI: 10.0084 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 21.2 | 8.4e-07 | 152 | 201 | 112 | 160 |
YABBY 112 vpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 p+ ++ k +++P+ay f ee qrik + P++ h e ++ W 0800010130 152 KPKvNVKGETKPKKAPTAYLVFAEEERQRIKLAEPELKHDEISQRLSRTW 201 3441356667889***************************9877766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 9.03E-8 | 12 | 68 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-7 | 14 | 70 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 6.31E-4 | 15 | 68 | No hit | No description |
PROSITE profile | PS50118 | 10.632 | 15 | 93 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 0.068 | 66 | 144 | IPR009071 | High mobility group box domain |
SuperFamily | SSF47095 | 7.99E-10 | 70 | 145 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.0E-9 | 72 | 145 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 0.00313 | 72 | 140 | No hit | No description |
SuperFamily | SSF47095 | 8.12E-17 | 147 | 224 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.4E-15 | 162 | 224 | IPR009071 | High mobility group box domain |
SMART | SM00398 | 2.2E-11 | 162 | 232 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.20E-11 | 163 | 226 | No hit | No description |
Pfam | PF00505 | 1.9E-15 | 163 | 226 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 15.71 | 163 | 226 | IPR009071 | High mobility group box domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVEGKLDGEI LPAPPKRALT AYLIFCQRHR ERIMREIQPD PSSKFTKDQM QQVTTRLAGL 60 WNNISPKELK ETAYLIFCSR HRKDIMRQIH KDPLAKFTRA EMQQVTTTLA DMWNKISPSE 120 LASCREEAKV ELEKYRALKA EYRAPVYGPA KKPKVNVKGE TKPKKAPTAY LVFAEEERQR 180 IKLAEPELKH DEISQRLSRT WKAIDENEKR RYQARAEEQK QNLERQSILP SNSLAGEHLP 240 MMSMASYDID PRAI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022840942.1 | 1e-180 | High mobility group box domain | ||||
TrEMBL | A0A090N4U4 | 1e-178 | A0A090N4U4_OSTTA; High mobility group box domain | ||||
STRING | A0A090N4U4 | 1e-179 | (Ostreococcus tauri) |
Publications ? help Back to Top | |||
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