PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

0700010329

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

NF-YB

Protein Properties

Length: 550aa MW: 60743.7 Da PI: 5.2976

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0700010329	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	34.1	6.3e-11	35	121	5	80
NF-YB 5 drflPianvsrimkkvlPa....nak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 d+ lP a v ri+k l a +ak i kda ec+ fi ++t+ a++ c+ +r+t++++d+l a+ + f + + 0700010329 35 DEDLPRAHVKRIVKSKLNAldnvDAKgqafepnIQKDALTAHGECAKIFIHYITATANEICRDHRRQTVSAEDVLRAIEECDFGEIA 121 677999999999998776433232222233334999******************************************999887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-29	34	176	IPR009072	Histone-fold
SuperFamily	SSF47113	5.33E-20	37	162	IPR009072	Histone-fold
Pfam	PF00808	6.4E-9	38	112	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Pfam	PF03151	1.8E-10	226	501	IPR004853	Sugar phosphate transporter domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MHRARALDSS SNWFLPCDTL HRASRVHSHL ATVMDEDLPR AHVKRIVKSK LNALDNVDAK 60 GQAFEPNIQK DALTAHGECA KIFIHYITAT ANEICRDHRR QTVSAEDVLR AIEECDFGEI 120 ALETRAALET WQRSAKRKRD EKKEDEGDDA GDEKDGVADG DGEDAGDGEQ NEAEDAEEPN 180 DRSSQHERRV FRAMGALTTL SRAILGFGGR DLRDERLVRA VYAFRATFYL LAWGTTSGLI 240 ILLNDAVLNK YDFPYPIAVS ATGPLVSWII AAVLVVTNRV KLEKTLTIRE WLLTVFPIGF 300 FTAVTYAAGN QLYLYLSVSF IQMMKSLSPC VVFAMLVMAK LDTPTKPKVV SVAMMTTFTA 360 LGMTLMIIGE GAESMRMVLF QNFLDNRGFG LLEGLFYTCP ANLFFLAIGV AIFEEREISL 420 RGDLEIVRQN PWPFIAVSVL GFLVLITTLG VIKTCGSLTF KAAGQLRNIA IILIGVIFMG 480 EKTTFLQLFG YGVNVLGFAY YQMTKADEDV RKLAEAEGGT GDESEQKLLD SPRSSVSNGS 540 DGATEFHKL*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MHRARALDSS SNWFLPCDTL HRASRVHSHL ATVMDEDLPR AHVKRIVKSK LNALDNVDAK  60
GQAFEPNIQK DALTAHGECA KIFIHYITAT ANEICRDHRR QTVSAEDVLR AIEECDFGEI  120
ALETRAALET WQRSAKRKRD EKKEDEGDDA GDEKDGVADG DGEDAGDGEQ NEAEDAEEPN  180
DRSSQHERRV FRAMGALTTL SRAILGFGGR DLRDERLVRA VYAFRATFYL LAWGTTSGLI  240
ILLNDAVLNK YDFPYPIAVS ATGPLVSWII AAVLVVTNRV KLEKTLTIRE WLLTVFPIGF  300
FTAVTYAAGN QLYLYLSVSF IQMMKSLSPC VVFAMLVMAK LDTPTKPKVV SVAMMTTFTA  360
LGMTLMIIGE GAESMRMVLF QNFLDNRGFG LLEGLFYTCP ANLFFLAIGV AIFEEREISL  420
RGDLEIVRQN PWPFIAVSVL GFLVLITTLG VIKTCGSLTF KAAGQLRNIA IILIGVIFMG  480
EKTTFLQLFG YGVNVLGFAY YQMTKADEDV RKLAEAEGGT GDESEQKLLD SPRSSVSNGS  540
DGATEFHKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022839472.1	0.0	Triose-phosphate transporter domain
TrEMBL	A0A1Y5IJN1	0.0	A0A1Y5IJN1_OSTTA; Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter (Fragment)
STRING	A0A090M9H3	0.0	(Ostreococcus tauri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-19	nuclear factor Y, subunit B11