PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

0500010395

Common Name

Ot05g03950, OT_ostta05g03900

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 314aa MW: 34891 Da PI: 10.9667

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0500010395	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.8e-09	193	243	3	53
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 k+t++ ++ l +Le++++ ++yp+ ++ e + ++L+++++ WF+ rR 0500010395 193 KKTRLGASNLATLEKVYALTQYPDDAMLESVRQATKLPTSKIIAWFKERRG 243 678889999****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.592	188	248	IPR001356	Homeobox domain
SMART	SM00389	9.6E-7	190	252	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-10	190	251	IPR009057	Homeodomain-like
Pfam	PF00046	5.4E-7	193	243	IPR001356	Homeobox domain
CDD	cd00086	1.32E-6	193	242	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.4E-10	194	249	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MLLARARAVS TVRPCARASI ASTRATKRAP GATRGREIIG AAGSRRIQVD DAHARAVATR 60 ASTANGNDWE DLFDAFERQG AAQRIRESIP RVKARALERA LARGRRRVEV GKLCKELELD 120 RSDVLAWLKA NGHRAEELAV TYAEEIRLEA DESAQREARL EREREERARR EREREEKGKN 180 LGPGGMPAYK SYKKTRLGAS NLATLEKVYA LTQYPDDAML ESVRQATKLP TSKIIAWFKE 240 RRGGNRRVSP SSPQSAGDQR VERKGTTGGY SYTRREDADD RKSGLRRGDT RDEYGGGGRG 300 RPGRDSASNW SPN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003079492.1	0.0	Homeobox domain
TrEMBL	Q018M5	0.0	Q018M5_OSTTA; Homeobox domain
STRING	Q018M5	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7109	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	4e-06	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Entrez Gene	9834466

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]