PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

0500010132

Common Name

OT_ostta05g01330

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

C3H

Protein Properties

Length: 434aa MW: 42950.3 Da PI: 7.5358

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0500010132	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.2e-06	3	16	13	26
S--TTTTT-SS-SS CS zf-CCCH 13 GtCkyGdrCkFaHg 26 G C +G++C+FaH+ 0500010132 3 GSCARGESCRFAHD 16 9************5 PP
2	zf-CCCH	23.4	1.1e-07	43	60	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 ++a+ GtCk+Gd+C+F+H+ 0500010132 43 DHAK-GTCKRGDQCRFSHD 60 6788.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.84	1	18	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.957	35	62	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.001	37	61	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-5	41	60	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
XRGSCARGES CRFAHDGTPG GNVNASGGRT GSPHRVAAGV CFDHAKGTCK RGDQCRFSHD 60 VAAVAAFAKI ASASGSPTSS PTNGRVGTVN IPKPLPIAGA LSAALRPMVK AEPAPAPAPI 120 VQRSGAIDYA SAAKAGVVGA AEGSFAAALV GKKMPSGDNV ATAGVPTASP PPPAVEKHPA 180 LTASGASVPA PRFPAPNGGV TAGVPAVPVM GDANGLPKPS YQFGTGSMVA GDYATEDRAG 240 QGANGSSLGS RSAPKQYPKP EFAFGSGATG TPLETNAVPV ANESFVPPVP AGPPPEANQR 300 PQATPGFGFG QPGFGLAQPE KAAPHANFWG GHAQSPTNGV VVQNGAGADG SSQLGSEWDM 360 SGMGMEGLVE DYSKLGTYDA LGGNSPFSVG LGYSLFSPAV SQQQDGAGYQ QQEQSQPASN 420 LWGSSSSFSG AGW*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

XRGSCARGES CRFAHDGTPG GNVNASGGRT GSPHRVAAGV CFDHAKGTCK RGDQCRFSHD  60
VAAVAAFAKI ASASGSPTSS PTNGRVGTVN IPKPLPIAGA LSAALRPMVK AEPAPAPAPI  120
VQRSGAIDYA SAAKAGVVGA AEGSFAAALV GKKMPSGDNV ATAGVPTASP PPPAVEKHPA  180
LTASGASVPA PRFPAPNGGV TAGVPAVPVM GDANGLPKPS YQFGTGSMVA GDYATEDRAG  240
QGANGSSLGS RSAPKQYPKP EFAFGSGATG TPLETNAVPV ANESFVPPVP AGPPPEANQR  300
PQATPGFGFG QPGFGLAQPE KAAPHANFWG GHAQSPTNGV VVQNGAGADG SSQLGSEWDM  360
SGMGMEGLVE DYSKLGTYDA LGGNSPFSVG LGYSLFSPAV SQQQDGAGYQ QQEQSQPASN  420
LWGSSSSFSG AGW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003079229.2	0.0	Zinc finger, CCCH-type
TrEMBL	A0A090M106	0.0	A0A090M106_OSTTA; Zinc finger, CCCH-type
STRING	A0A090M106	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP13040	3	3

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]