PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0300010469
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 674aa    MW: 74815 Da    PI: 6.963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0300010469genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011324347123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 ++C +Cgk+F++   Lk H  + +
  0300010469 324 HVCDKCGKMFPTFGGLKLHRVRwC 347
                 79*****************87655 PP
2zf-C2H211.90.00068491512323
                 ETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                 C+ C+ + +++  Lk+H+r+ H
  0300010469 491 CTECDFRGKNHKGLKVHMRLvH 512
                 *******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF475763.34E-2327145IPR001715Calponin homology domain
Gene3DG3DSA:1.10.418.105.8E-2728146IPR001715Calponin homology domain
SMARTSM00355310281301IPR015880Zinc finger, C2H2-like
SMARTSM0035524324344IPR015880Zinc finger, C2H2-like
SMARTSM0035583388411IPR015880Zinc finger, C2H2-like
SMARTSM0035531430456IPR015880Zinc finger, C2H2-like
SMARTSM003550.04489512IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.1330.408.6E-14553670IPR013813Endoribonuclease L-PSP/chorismate mutase-like
SuperFamilySSF552981.23E-13556670IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010421.5E-8558664IPR006175YjgF/YER057c/UK114 family
CDDcd061501.63E-28559668No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MTTPTPRARS TGATRRGRTT STPTPSAIGR LELLGWLNRE LTCDLASLRD CADCVAYCQL  60
VDALHPGAVI LRALDFNAVT EGDKQRNARV LERGMRACGM EATVDYDALA LGKFTEHNNL  120
LRWFYAYVAK NGAEALERYD AYAARVKAQR HKARDGGEKS EATVSRERCG RADDESEEDD  180
EGPRSGEVRI RAEVATGNND ISDSEDGEGG RAAARRENPG TLFDDVLNAD NQNTTKQASQ  240
TNRKRRQAGR PSRYTIDEED DDQEYDIIPV ATQEYPDEIA CSCGLCGRTF KTVRGRNVHA  300
SRCAGVRVEN APASAFVNAS SGEHVCDKCG KMFPTFGGLK LHRVRWCKGM VSDNGADIVS  360
SKTLVSSGSL REMETTKRAR RCLLRQSEDC DHANTSFKTF NALQEHMEQC HGVPRVMEPM  420
REVELDRSCR YCQECPTGEY RCKSFRQLCD HYKKEHNIVL LAVPGGANDV EVNGVSHEHA  480
QVEMLNGHLD CTECDFRGKN HKGLKVHMRL VHNLQVKSIE PPITRPSKRL PLEASARAQM  540
RGGDASAEIQ RINPHEYGFS PIVTFGRHVT LCGVTASDEV EPTTTGQMRQ AMVNLVELLV  600
QAGTDAMHLL SVHVYITDIR EQFNVSKVWD KFFSDCGIDQ KDRPVRYITQ TFASKDAMLR  660
VELGAQAVLP TGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1pa7_A8e-15201457130Microtubule-associated protein RP/EB family member 1
1ueg_A8e-15201457130Microtubule-associated protein RP/EB family member 1
2r8u_A8e-15201457130Microtubule-associated protein RP/EB family member 1
2r8u_B8e-15201457130Microtubule-associated protein RP/EB family member 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838604.11e-150Endoribonuclease L-PSP/chorismate mutase-like
TrEMBLA0A090M3N21e-148A0A090M3N2_OSTTA; Endoribonuclease L-PSP/chorismate mutase-like
TrEMBLA0A1Y5IAP61e-146A0A1Y5IAP6_OSTTA; Uncharacterized protein
STRINGA0A090M3N21e-149(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP543744