PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 0300010106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Family | GATA | ||||||||
Protein Properties | Length: 295aa MW: 32217.3 Da PI: 4.9007 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.8 | 4.8e-16 | 212 | 245 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ ++p+WRrgp +++LCnaCG +yr+++ 0300010106 212 CDHCGALESPQWRRGPAAKPMLCNACGTRYRRTN 245 9******************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.42E-11 | 205 | 249 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.8E-11 | 206 | 249 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 6.1E-8 | 206 | 259 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.466 | 206 | 261 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 9.26E-12 | 211 | 250 | No hit | No description |
Pfam | PF00320 | 2.2E-13 | 212 | 244 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MLARGRRGKT REECLARDLR RSDSAMTLRQ SQRTGEMGRM GDEGEKVPRE LEKVPRESEW 60 PGARVDVDAD EDWRRSTEES EEVEGDVAVD ASAHAEVESG RRWYTRVRIY DDECSTAVWD 120 AELAKLEASI LSSSDDASVG GVESSRFRRE ERRWAPPADY YEEDEENDGG NFGVAVGVNG 180 AGDARVVSVT STGGVWDTNN ENAVNTKSGG PCDHCGALES PQWRRGPAAK PMLCNACGTR 240 YRRTNNLGPS PLLRAAALGK RKTLSQQSEP NAKPNARCND PGSAKISFGS AMVF* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003078018.2 | 0.0 | Zinc finger, GATA-type | ||||
TrEMBL | A0A1Y5I6J8 | 0.0 | A0A1Y5I6J8_OSTTA; GATA-4/5/6 transcription factor | ||||
STRING | A0A096P7R3 | 0.0 | (Ostreococcus tauri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP450 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 2e-11 | GATA transcription factor 26 |