PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

0200010675

Common Name

OT_ostta02g04300

Organism

Ostreococcus tauri

Taxonomic ID

70448

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Nin-like

Protein Properties

Length: 520aa MW: 56380.2 Da PI: 9.1186

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0200010675	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.7	7.2e-26	112	161	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +ei++e+ls++F+lp ++A+++Lgv+lTvLKr+CR+yGIkRWP+Rk+ksl 0200010675 112 SEITQEELSSCFHLPSEAACRKLGVGLTVLKRQCRKYGIKRWPFRKMKSL 161 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.859	97	181	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-19	114	161	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MERARGAEEA TREATTPGDD GDDDDAYELG ERMDDVSESD GYDYDDFEGG AEALMSVKDE 60 LAAARTGSKT SKGAKAKAAG EPNGSLKGDA ESRDKRNQSR ENRRVRQFRS ASEITQEELS 120 SCFHLPSEAA CRKLGVGLTV LKRQCRKYGI KRWPFRKMKS LDRLITNVQA GISPGDQNRL 180 LVKSVEELED QKRKMEECAM LDLDDTTKKL QQAYSKANHK ARRNRGEATR IRVHAAANAV 240 RELEARRRGG YGDEPNGAGE TLLELAHKIH DITVPVKAAT EAPVLPQVLT GFPATAPPAM 300 RGETTPVKRD DATLKPLLSN TPTPPAGNGV KVEMESVEGK KASTSSNPKP MKGDLVAANY 360 VGPPEKVLTA VRGAWSPARP ARRTDDPSDT EAFLSPREAV RRGRPSVVAS VRPSVGIASS 420 ETAKANANGR TKSAVTEDHP AFGLAPVVKG ARSGAQSRLS GIERAELEHM FRDRLTKVRD 480 SMCEAFQIDP TECEVHFSPK LQATSLATAV EKLATRNSR*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MERARGAEEA TREATTPGDD GDDDDAYELG ERMDDVSESD GYDYDDFEGG AEALMSVKDE  60
LAAARTGSKT SKGAKAKAAG EPNGSLKGDA ESRDKRNQSR ENRRVRQFRS ASEITQEELS  120
SCFHLPSEAA CRKLGVGLTV LKRQCRKYGI KRWPFRKMKS LDRLITNVQA GISPGDQNRL  180
LVKSVEELED QKRKMEECAM LDLDDTTKKL QQAYSKANHK ARRNRGEATR IRVHAAANAV  240
RELEARRRGG YGDEPNGAGE TLLELAHKIH DITVPVKAAT EAPVLPQVLT GFPATAPPAM  300
RGETTPVKRD DATLKPLLSN TPTPPAGNGV KVEMESVEGK KASTSSNPKP MKGDLVAANY  360
VGPPEKVLTA VRGAWSPARP ARRTDDPSDT EAFLSPREAV RRGRPSVVAS VRPSVGIASS  420
ETAKANANGR TKSAVTEDHP AFGLAPVVKG ARSGAQSRLS GIERAELEHM FRDRLTKVRD  480
SMCEAFQIDP TECEVHFSPK LQATSLATAV EKLATRNSR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022840834.1	0.0	RWP-RK domain
TrEMBL	A0A090ME75	0.0	A0A090ME75_OSTTA; RWP-RK domain
STRING	A0A090ME75	0.0	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-24	RWP-RK domain-containing protein

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]