 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 0200010383 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
|
||||||||
| Family | Nin-like | ||||||||
| Protein Properties | Length: 116aa MW: 13623 Da PI: 10.2093 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 73.3 | 3e-23 | 2 | 51 | 4 | 52 |
RWP-RK 4 eisledlskyFs.lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52
++sl++l + F l+i+dAAkeLg++ T+LK++CR+yGI RWPhR++ksl
0200010383 2 NLSLQQLTRLFGvLKIEDAAKELGIGITALKKRCREYGIYRWPHRQLKSL 51
79999***999538**********************************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 15.994 | 1 | 72 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 7.4E-19 | 2 | 51 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 116 aa Download sequence Send to blast |
MNLSLQQLTR LFGVLKIEDA AKELGIGITA LKKRCREYGI YRWPHRQLKS LDNLIDELDK 60 LKFGDRDDTC VKEAIVQLKY YKQKIVMDPC YKIPQSVFRL RQAQFKVLRY SNRQA* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_001416406.1 | 8e-50 | RWP-RK domain-containing protein | ||||
| TrEMBL | A4RSZ7 | 2e-48 | A4RSZ7_OSTLU; RWP-RK domain-containing protein | ||||
| STRING | ABO94699 | 3e-49 | (Ostreococcus 'lucimarinus') | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP84 | 16 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G18790.1 | 4e-19 | RWP-RK domain-containing protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|