PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g43790.1 | ||||||||
Common Name | LOC9272516, Os12g0634500, OSNPB_120634500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 169aa MW: 17921.3 Da PI: 11.5446 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 60 | 108 | 1 | 49 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 e++++r rr+++NRe+ArrsR+RK+ ++eL+ k+ +L a ++L +l LOC_Os12g43790.1 60 EERRRRLRRRISNRESARRSRARKQRHLDELRAKASALRATSRDLVARL 108 68899**********************************9999988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.2E-6 | 56 | 109 | No hit | No description |
SMART | SM00338 | 2.1E-7 | 58 | 124 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.8E-7 | 60 | 108 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.53 | 62 | 108 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.88E-8 | 64 | 109 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 67 | 82 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MAGLPFPSDS DTALEAFLAD IGFGAPCPEA APAPSPSHPD TTAAAATDEP VMAGDDQADE 60 ERRRRLRRRI SNRESARRSR ARKQRHLDEL RAKASALRAT SRDLVARLRG ARARAALVAL 120 TNAQLRDEAG KLALRLAAAR RVIALRQLYS AAAAGGGFEM QALASLIA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 83 | RRSRARKQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QLP2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g43790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g43790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL831809 | 0.0 | AL831809.3 Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619047.1 | 1e-111 | ocs element-binding factor 1 | ||||
TrEMBL | A0A0E0RKF6 | 1e-109 | A0A0E0RKF6_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QLP2 | 1e-109 | Q2QLP2_ORYSJ; BZIP transcription factor family protein, expressed | ||||
STRING | ORUFI12G22190.1 | 1e-110 | (Oryza rufipogon) | ||||
STRING | OS12T0634500-00 | 1e-110 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15125 | 19 | 19 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g43790.1 |
Entrez Gene | 9272516 |
Publications ? help Back to Top | |||
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