PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g43530.1 | ||||||||
Common Name | LOC107277673, OsJ_36963 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 41331 Da PI: 7.6376 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 148.7 | 2.9e-46 | 35 | 189 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekew.yfFskrdkkyatgkrkn 75 pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk +++a eke+ yfF+ r +ky+++ r+n LOC_Os12g43530.1 35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgsssssslsTAAAAEKECgYFFCLRGRKYRNSIRPN 126 69***************************.99***************7789***9999999888764445677888***************** PP NAM 76 ratksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+t sg+Wkatg dk+++s+ g +glkk+Lv+y+g+a kg+ktdW+mhe+rl LOC_Os12g43530.1 127 RVTGSGFWKATGIDKPIYSSslaaaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 189 *******************877666655554455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 47.846 | 34 | 214 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-47 | 34 | 214 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-23 | 36 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MEEEKRLERI IKEIDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP 60 FSIDIIKEID IYKHDPWDLP KVSHGAVALQ GSSSSSSLST AAAAEKECGY FFCLRGRKYR 120 NSIRPNRVTG SGFWKATGID KPIYSSSLAA AAAAAGAGDC IGLKKSLVYY RGSAGKGTKT 180 DWMMHEFRLP SSISDSDHLQ DASETWTICR IFKRSMTYTK GRAAAAAASM NKRISHELQH 240 IHHHQQQQFY YHEVVHDGHG HHHRRHLQHY AGSASMAAAA ANIVDVIDHS SDAETTTRSH 300 SHSQSHLVAD IRHRQSPFML DFHAGTASSS SSTAAGWSEV MSFSRDGGSS SGSSWDELGR 360 IMDISTNSAN NNYYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-43 | 36 | 214 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-43 | 36 | 214 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-43 | 36 | 214 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-43 | 36 | 214 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-43 | 36 | 214 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-43 | 36 | 214 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QLR9 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g43530.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g43530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL713905 | 0.0 | AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619497.1 | 0.0 | NAC domain-containing protein 41 isoform X2 | ||||
Swissprot | Q9SK55 | 7e-75 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A0E0RKD0 | 0.0 | A0A0E0RKD0_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QLR9 | 0.0 | Q2QLR9_ORYSJ; No apical meristem protein | ||||
STRING | ORUFI12G21970.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-73 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g43530.1 |
Entrez Gene | 107277673 |